Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq14 116 3e-21 >seq14 Length=872155 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || |||| || |||| || || || ||||| || ||| | | Sbjct 57340 ATGCAGATCTTTGTCAAGACGCTGACTGGTAAGACTATTACTCTGGAGGTCGAATCTTCC 57281 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || ||| | | | | | ||| ||||||| ||||| |||||| | || ||| ||| Sbjct 57280 GACACGATCGACAACGTCAAGTCAAAAATTCAAGATAAGGAAGGTATTCCTCCAGACCAA 57221 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| || ||||||||||||||| || ||| | ||||||||||| Sbjct 57220 CAGAGATTGATTTTTGCCGGTAAACAACTGGAAGATGGCAGAACGTTATCCGATTACAAT 57161 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 ||||| ||||| |||||||||||| |||| || |||| |||| || Sbjct 57160 ATTCAAAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGG 57114 Score = 100 bits (110), Expect = 2e-16 Identities = 150/213 (70%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| | || || |||| || || || || ||| ||| ||| | | Sbjct 56884 ATGCAGATCTTCGTTAAGACGCTGACTGGTAAGACTATAACCCTCGAGGTCGAATCTTCC 56825 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| ||||||| ||||| |||||| | || ||| ||| Sbjct 56824 GACACTATTGACAACGTCAAGTCAAAAATTCAAGATAAGGAAGGTATTCCTCCAGACCAA 56765 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| || ||||||||||||||| | ||| | |||| ||||| Sbjct 56764 CAGAGATTGATTTTTGCCGGTAAACAACTGGAAGATGGTAGAACATTATCCGACTACAAC 56705 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTA 29174 ||||| |||||||||||||| ||| |||| ||| Sbjct 56704 ATTCAAAAGGAATCTACTCTCCACCTGGTCTTA 56672 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || ||||||| | || |||||||| || ||| || ||| | | Sbjct 57112 ATGCAAATTTTTGTCAAAACTCTAACTGGCAAAACTATAACCCTAGAGGTTGAATCTTCC 57053 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | | ||| ||||||| || ||||||||| | || ||| ||| Sbjct 57052 GACACTATTGACAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAA 56993 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || ||| | || ||||| || || |||||||||||| | ||| || | ||||| || Sbjct 56992 CAGAGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACGCTGTCTGATTATAAC 56933 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||| ||||||||| | || | ||| | |||| |||| || Sbjct 56932 ATTCAGAAAGAATCTACTTTGCATTTAGTGCTGAGATTGAGAGGTGG 56886 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| || |||| || ||||| || |||||||| || ||| ||| | | Sbjct 57568 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 57509 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||| ||||||| || ||||||||| | || ||| ||| Sbjct 57508 GATACCATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAA 57449 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 || || | || ||||| || || |||||||||||| | ||| || | ||||| || Sbjct 57448 CAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACACTGTCTGATTATAAC 57389 Query 29142 ATTCAGAAGGAATCTAC 29158 |||||||| |||||||| Sbjct 57388 ATTCAGAAAGAATCTAC 57372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428335911254135