Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq15 105 5e-18 seq14 104 2e-17 seq12 98.7 8e-16 >seq15 Length=1201643 Score = 105 bits (116), Expect = 5e-18 Identities = 142/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 18121 TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATT 18180 ||| ||||| ||||||||||||||||||||||| | || ||| ||| |||||||||| Sbjct 71281 TGTAAAGTG--GATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATT 71224 Query 18181 GTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT 18240 | || || ||| |||| | ||||||||| || || | |||||||| || ||| | Sbjct 71223 GCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCT 71164 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | |||||| | ||| ||||||| | || ||| | |||||| | || || | Sbjct 71163 TTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAG 71104 Query 18301 TCAATGTTTTTACAAAA 18317 |||| || || |||||| Sbjct 71103 TCAAAGTCTTGACAAAA 71087 >seq14 Length=872155 Score = 104 bits (114), Expect = 2e-17 Identities = 116/154 (75%), Gaps = 1/154 (1%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||| || || ||||| ||||||||||||||||||| | |||| ||| || Sbjct 56672 TAAG-ACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGATAATGTTCTACCAT 56730 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||||| |||||| || ||| | || | ||| ||||| || || | |||||||||| Sbjct 56731 CTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTAT 56790 Query 18232 CGGCAATTTGTTGCTTGACCTGTGCAACAGTGTC 18265 | ||||| | |||||| | ||| |||||| Sbjct 56791 CTTGAATTTTTGACTTGACGTTGTCAATAGTGTC 56824 Score = 95.1 bits (104), Expect = 9e-15 Identities = 139/197 (71%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||| |||||||| || || | || |||| ||| |||||||| ||| || || Sbjct 57372 GTAGATTCTTTCTGAATGTTATAATCAGACAGTGTTCTACCATCTTCCAGTTGCTTACCG 57431 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | || ||||| || || | ||||| || || ||||| | |||| Sbjct 57432 GCAAAAATCAACCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTTTGACTTG 57491 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| || ||| | ||| ||| | || ||| |||| |||||||| || Sbjct 57492 ACGTTATCAATGGTATCAGAAGATTCGACTTCCAATGTTATGGTTTTACCGGTCAAAGTC 57551 Query 18309 TTTACAAAAATTTGCAT 18325 || |||||||||||||| Sbjct 57552 TTGACAAAAATTTGCAT 57568 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188 || |||||||| |||||||| || || | || ||| ||| |||||||| ||| || || Sbjct 56916 GTAGATTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCATCTTCCAGTTGCTTACCG 56975 Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248 ||| | || | ||| ||||| || || | ||||| || || ||||| | |||| Sbjct 56976 GCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCTTTGTCCTGAATTTTTGACTTG 57035 Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308 || | ||| |||||| | || || | ||| || ||||||| || | ||| Sbjct 57036 ACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGTTTTGCCAGTTAGAGTT 57095 Query 18309 TTTACAAAAATTTGCAT 18325 || |||||||||||||| Sbjct 57096 TTGACAAAAATTTGCAT 57112 >seq12 Length=1068413 Score = 98.7 bits (108), Expect = 8e-16 Identities = 149/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||||||||| ||||||||||| | || ||| | | ||||||| Sbjct 493794 ACCAAGTGCAAAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTTCTGCCATCTTCC 493735 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 493734 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 493675 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||||| | || ||| | ||| || | || Sbjct 493674 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTA 493615 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 493614 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 493583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343921404665