Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 226 3e-54 seq10 181 9e-41 seq15 170 2e-37 seq14 120 3e-22 seq12 93.3 4e-14 >seq5 Length=577572 Score = 226 bits (250), Expect = 3e-54 Identities = 459/677 (68%), Gaps = 6/677 (1%) Strand=Plus/Minus Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGG--CGATTGCATCGGACACATGA 23321 || ||||| ||| |||||||||||||| || ||||| || || | ||| | | | Sbjct 305868 GCTTCAAACTCGTCACCGTAACAGTCGCTTAGACCGGGAGCGGCTG--TTGGAGAGAACA 305811 Query 23322 GACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGT 23381 | |||| | | | ||| || || |||| |||||||| || ||||| ||||| Sbjct 305810 AAGTCCAAGTCCCATTCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCACAGAGCAG 305751 Query 23382 AGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGT 23441 |||| || | || || | || ||||| ||| ||||||| | | ||| | ||| | Sbjct 305750 GAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAAT 305691 Query 23442 CCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGC 23501 | || | || |||||||| || || ||||| | ||||| || || ||||| || || | Sbjct 305690 CAAAGATATCAGCATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTAC 305631 Query 23502 CGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGT 23561 | ||||| ||||| |||||||| || || || | || | | ||| || | | |||| Sbjct 305630 CACCCTGGTCGACATAACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGT 305571 Query 23562 TGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGA 23621 | || | ||| | || || | ||||| ||| |||| ||| || | || | Sbjct 305570 TAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTA 305511 Query 23622 AACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGC 23681 ||| || || || | | ||| || |||| || |||| ||||| ||||||||| || | Sbjct 305510 GACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATAC 305451 Query 23682 CCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCG 23741 ||||||| |||||| || | |||||||||||||| || |||||||| | ||| || | Sbjct 305450 CCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAG 305391 Query 23742 TAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGT 23801 || | || |||| || || ||| || ||||||||| ||||||| || | Sbjct 305390 TACCAGCATTAAACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTAT 305331 Query 23802 ACGTGTCGATGGCGGCATCAATGTCCTCT-CCGTGTATACCGATGGCGACGCGCATCATC 23860 | || || | || || || |||| |||| ||||| || || | ||||| | ||| || Sbjct 305330 ATGTTTCTAGAGCAGCTTCGATGT-CTCTACCGTGGATGCCCAGTGCGACTCTCATAATT 305272 Query 23861 ATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 | || ||| || | ||| || |||||| ||| | | | ||| ||||||| || Sbjct 305271 AAGTGTTGTGGACGTTCGGCCACTTGGCCGTTGATTCTTAGTAAATAAGAACGTTCCAAA 305212 Query 23921 GTTTTAAATCCAAAATA 23937 ||||| || |||||||| Sbjct 305211 GTTTTGAAACCAAAATA 305195 >seq10 Length=751133 Score = 181 bits (200), Expect = 9e-41 Identities = 475/716 (66%), Gaps = 13/716 (2%) Strand=Plus/Plus Query 57591 GCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGG 57650 || ||||| || || ||||||| |||||| | || ||||||||||| | || ||| Sbjct 379963 GCCGAAGCCTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCATGACTGG 380022 Query 57651 GATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 | | | || ||| |||||| ||||||| || | || ||||||||| Sbjct 380023 AACAACAGAATGAACGAAAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGCC 380082 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767 || || || ||||||||||| || || ||||| |||| || || ||||| ||| | Sbjct 380083 GCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCCACCGAAGTTCAAATT 380142 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 | ||||| | | || || || || ||| | |||||||| | ||||| |||| Sbjct 380143 CCAGAGGCAAAGAGTTTCTATGGTTTCCAAATCATGATTGAAAATATTCATTCTGAAACT 380202 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC-TGTTCAA 57886 || || || | |||||||| ||| | |||||| | | | || | | | ||||||| Sbjct 380203 TACTCCTTATTGATCGATACCTACATCAAGGAC-CCTAAGGAAAGTGAATTCTTGTTCAA 380261 Query 57887 CGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAA 57946 || || | || || || | |||| ||||||| |||||| | | | |||||| | Sbjct 380262 TGCCATTCACACTATCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCTAAGATGGATTCA 380321 Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 | ||| ||| ||| | || || ||| |||| || || | |||||||| | || Sbjct 380322 AGACGCTGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCTTCTATCGAAGGTGTCTT 380381 Query 58007 CTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 ||| || || ||| || | || || ||| ||||||| | || ||||||| || | Sbjct 380382 CTTCTCCGGTTCCTTCGCCTCCATTTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTTT 380441 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||| || ||||| ||||| | | ||||| ||| | || || || ||||| ||| | Sbjct 380442 GACCTTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACTTTGCATGCTT 380501 Query 58127 AATGTACTCTCACATTGTCAATAAACC-GACGCGGGATCGCATCTTG--GACATTATCAC 58183 | ||| | | || | || ||||| ||| | | | | ||| | ||| |||| Sbjct 380502 ATTGTTCGCCCATTTGAAGAACAAACCAGACCC---AGCAATTGTTGAAAAAATTGTCAC 380558 Query 58184 CGAGGCGGTCGCGATCGAA-AATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCG 58242 |||||| || | || ||| || || | || || ||| |||| || ||| |||| | Sbjct 380559 CGAGGCTGTGGAAATTGAACAAAGA-TACTTCTTGGACGCCTTACCAGTTGCCTTGCTAG 380617 Query 58243 GTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 |||||||| ||| | ||| | ||| ||||||| ||||| |||||||||||| Sbjct 380618 GTATGAACGCTGACCTAATGAACCAATACGTTGAGTTCGTTGCTGACAGACTTTTG 380673 >seq15 Length=1201643 Score = 170 bits (188), Expect = 2e-37 Identities = 421/639 (66%), Gaps = 0/639 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 || ||| ||| |||||||||| || || ||||| ||||| ||||| || | || || Sbjct 235767 TTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCAGGGAACAAATCCCTTGCACG 235826 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| || | | ||| | | ||| | |||||| || | || |||||||| Sbjct 235827 GATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAGTCGAAGATATCTGCATGCCA 235886 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | | ||| |||||| ||||| |||||||| || || || || || || ||||| Sbjct 235887 TGGTTCCAAGAAAAGGGCAAAGGCGCCAGGTCTCTTGTTACCTCCTTGGTCCACATAACG 235946 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || || |||||| | || | | ||| || | | || || || | ||| || Sbjct 235947 AGCAGTATTGTTGAAAACACGGATCATAGGAATCAACCCATTTGAAGTACCGTTGGTACC 236006 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | |||||| | | || | ||||| || || | ||| | || || | | Sbjct 236007 GGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGAAGACCAACACCACCTGCAGT 236066 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || |||| ||||| ||| || || || || || || ||| || || Sbjct 236067 CTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATACCTTCAATAGAGTCATCCTT 236126 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | || | | |||||| ||||||||||| | | || ||| | || ||| | || Sbjct 236127 CATGGCAATTAGGAAACATGAAGACATTTGGGGATGTGGAGTACCAGCGTTGAATAAGGT 236186 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 ||| ||||| || || |||| |||||| | |||||| || | | | | || Sbjct 236187 TGGGGAAGCGTGAGTGAAATATCTTAACGACATCAAATTGTAGGTCTTCAGCACAGACTC 236246 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 ||| || ||||| ||||| | || || ||||| | || || || || | || | Sbjct 236247 AATATCACTACCGTGGATACCCAGCGCCACACGCATAACCAAGTGCTGTGGCCGTTCAGC 236306 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | | ||||| | | | | || ||| ||||| | || || || || |||||||| Sbjct 236307 CACTTCACCGTTCAGTCTTAGCAAATACGAACGCTCCAAAGTCTTGAACCCAAAATACGT 236366 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 ||| || || || | ||||| ||| ||||| || ||||| Sbjct 236367 ATACTTGAAATCTCTATCGTACACGATGGCTGAGTTCAA 236405 Score = 91.5 bits (100), Expect = 1e-13 Identities = 155/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || |||||| |||| || || || ||||| | || |||||| | || |||| | | Sbjct 71087 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 71146 Query 31261 CGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTC 31319 || | ||||| || ||| | | |||||||||| | || || ||||| || | Sbjct 71147 TGACAATGTCAAGTCAAAGATTCAAG-ACAAGGAAGGTATCCCACCTGACCAACAAAGAT 71205 Query 31320 TAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAA 31379 | || || ||||| || || ||||||||| || || || || || |||||||||| Sbjct 71206 TGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAA 71265 Query 31380 AAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| ||| | || | || | ||| |||| || |||| Sbjct 71266 AAGAATCCACTTTACACTTAGTCTTGAGATTGAGAGGTGGTA 71307 >seq14 Length=872155 Score = 120 bits (132), Expect = 3e-22 Identities = 164/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || |||||||| || ||| | || |||||| | ||| Sbjct 57112 ATGCAAATTTTTGTCAAAACTCTAACTGGCAAAACTATAACCCTAGAGGTTGAATCTTCC 57053 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| |||||| ||||| | || || ||||| Sbjct 57052 GACACTATTGACAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAA 56993 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || || ||||||| || || || ||||||||| Sbjct 56992 CAGAGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACGCTGTCTGATTATAAC 56933 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||| ||| | ||| | || || ||| |||| || |||| Sbjct 56932 ATTCAGAAAGAATCTACTTTGCATTTAGTGCTGAGATTGAGAGGTGGTA 56884 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| ||||| || || || || ||| |||| || ||| | ||| Sbjct 56884 ATGCAGATCTTCGTTAAGACGCTGACTGGTAAGACTATAACCCTCGAGGTCGAATCTTCC 56825 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | ||||| | ||| || |||||||| | || || ||||| Sbjct 56824 GACACTATTGACAACGTCAAGTCAAAAATTCAAGATAAGGAAGGTATTCCTCCAGACCAA 56765 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || ||||| ||||||| || || | ||| || ||| Sbjct 56764 CAGAGATTGATTTTTGCCGGTAAACAACTGGAAGATGGTAGAACATTATCCGACTACAAC 56705 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| ||||| || ||||| | || ||||||| |||| Sbjct 56704 ATTCAAAAGGAATCTACTCTCCACCTGGTCTTAAGGTTGAGGGGTGGTA 56656 Score = 93.3 bits (102), Expect = 4e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || ||||| || || | || || ||| | || Sbjct 57568 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 57509 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | ||| |||||| ||||| | || || ||||| Sbjct 57508 GATACCATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAA 57449 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || || ||||||| || || || ||||||||| Sbjct 57448 CAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACACTGTCTGATTATAAC 57389 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||| || | ||| | || || ||| |||| || |||| Sbjct 57388 ATTCAGAAAGAATCTACCTTGCATTTAGTGCTGAGATTGAGAGGTGGTA 57340 >seq12 Length=1068413 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| | || || || || || ||| | || |||||| | Sbjct 493583 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCT 493642 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | || | ||||| | || ||||||||||| | || || ||| Sbjct 493643 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 493702 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| || || |||||||| | || || || || Sbjct 493703 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTAC 493762 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||||||||| ||| | || |||| | ||| |||| || ||| Sbjct 493763 AACATCCAAAAAGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 493813 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766305274640