Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq15 149 1e-30 seq10 131 3e-25 seq5 102 2e-16 >seq15 Length=1201643 Score = 149 bits (164), Expect = 1e-30 Identities = 210/296 (71%), Gaps = 18/296 (6%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 || ||| ||| |||||| || || |||| | | || | | ||||| |||||| | Sbjct 565787 ATTTGGGACGGTAATGGATCCCGTGAATATCTAGATAAGATGGGGTTCACAGATAGAAAA 565728 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 | ||| ||||| || ||||| || |||||||||||| | ||||| |||||| |||| | Sbjct 565727 GTGGGGGATTTAGGGCCCGTTTATGGATTCCAATGGAGGCATTTCGGTGCTAAATACAAG 565668 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATT------GGCCA---ATATA 35503 |||||| | ||| ||| ||||| |||||||||||||||| || || ||| | Sbjct 565667 ACCTGTGATGACGACTATGCTGGACAGGGTATTGATCAATTGAAGCAGGTCATTCATAAA 565608 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 |||||||| |||||| |||||||||| || ||||||| || ||||| || Sbjct 565607 CTAAAGAC---------AAATCCTTATGATAGAAGAATTATTATGAGTGCTTGGAACCCA 565557 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 ||| || || |||||| | || ||||||||||| | ||||||||||| Sbjct 565556 GCTGATTTTGACAAGATGGCTTTGCCACCATGCCACATTTTCTCACAATTTTATGT 565501 >seq10 Length=751133 Score = 131 bits (144), Expect = 3e-25 Identities = 336/506 (66%), Gaps = 18/506 (4%) Strand=Plus/Plus Query 101859 AGAAGGAGCAGTGGGCTATTAATTGGATGCAAAGCAATAACGATTTG---GCGGAACTAA 101915 |||||| |||||||| | | ||||| ||| | | ||| ||| | ||| | Sbjct 380291 AGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGAC 380350 Query 101916 TTGTTGCCTTTGCTGCAGTTGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCT 101975 | || ||||||||| | | ||||| ||||||| ||| | ||||| |||||||||| Sbjct 380351 TAGTCGCCTTTGCTTCTATCGAAGGTGTCTTCTTCTCCGGTTCCTTCGCCTCCATTTTCT 380410 Query 101976 GGATCAAGAACAGGGGTATTTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGG 102035 || | ||||| || ||||| |||| ||| | |||| ||| || || || |||| || | Sbjct 380411 GGTTGAAGAAGAGAGGTATGATGCCAGGTTTGACCTTCTCTAACGAATTGATTTGCAGAG 380470 Query 102036 ACGAAGGTCTTCATCGCGACTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCC 102095 |||||||| | || ||||||||||||| | |||| | |||| || | Sbjct 380471 ACGAAGGTTTGCACACCGACTTTGCATGCTTATTGTTCGCCCA----TTTGAAGA---AC 380523 Query 102096 CATCAAGAGAAAG-GATTCTTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAA 102151 | | ||| || ||| ||| |||||||||| || || || |||||||||| | Sbjct 380524 AAACCAGACCCAGCAATTGTTGAAAAAATTGTCACCGAGGCTGTGGAAATTGAACAAAGA 380583 Query 102152 TTTCTCACAGTTTCCCTGCCTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAG 102211 | || | || | || ||| || | || |||||| | | |||| ||| Sbjct 380584 TACTTCTTGGACGCCTTACCAGTTGCCTTGCTAGGTATGAACGCTGACCTAATGAACCAA 380643 Query 102212 TACATTGAATTTGTGGCAGATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATA 102269 ||| |||| || || || || | ||| ||||||| | || || ||||| |||| | Sbjct 380644 TACGTTGAGTTCGTTGCTGACAGACTTTTGGTTGCCTTCGGTAACAAGAAA--TACTACA 380701 Query 102270 ATGTTACCAACCCCTTCCCATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTT 102329 | || ||||||||| || ||||| || || || | | |||||||||||| | Sbjct 380702 AGGTCGAAAACCCCTTCGACTTTATGGAAAACATCTCTTTGGCTGGTAAGACCAACTTCT 380761 Query 102330 TTGAAAAGAGAGTCGCCGAGTATCAA 102355 ||||||||||||| | || || ||| Sbjct 380762 TTGAAAAGAGAGTTTCTGATTACCAA 380787 >seq5 Length=577572 Score = 102 bits (112), Expect = 2e-16 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94189 GAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCAGTGCAC 94248 |||||||| || || || |||||||| |||| | | ||||| ||||||||| ||| Sbjct 306102 GAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAATTTCACAGCAT 306043 Query 94249 AAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATGGTATCC 94308 || ||||| |||||||| | || | |||| ||||||||||||||| ||| | ||| Sbjct 306042 AAGTTTGATGACTTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCT 305983 Query 94309 TTAAAGCACACATAAGGTGTTCCAGTTTC 94337 ||| | |||| ||||||| || ||||| Sbjct 305982 TTATAAACCACAAAAGGTGTACCCGTTTC 305954 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583784456235