Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq15 185 8e-42 seq5 172 5e-38 seq10 140 3e-28 >seq15 Length=1201643 Score = 185 bits (204), Expect = 8e-42 Identities = 975/1542 (63%), Gaps = 41/1542 (3%) Strand=Plus/Plus Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179 |||| | |||||| || || || || || ||||| || || | | | || || || Sbjct 234859 AATAAATATGGATTAACGACTTGGAATTCACCAGACAAGACACGACGAGAGTACATGTTT 234918 Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239 ||| |||||||| | || |||| | | |||||||| || || ||||| ||| Sbjct 234919 GAAGTCACTGGTTCAAAACATTCGTTATACCCAAGAATTTGAGAAGTCGAGGCAGTTGGC 234978 Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGT-ATTAATTCTCTTTTTTAGTTC 37298 ||||| || ||| | ||||| ||||||||| | | || || || || || | Sbjct 234979 ATTGGCGCCATTGTTAAAGAGTTTCTTAATCCATGTTTGACTATGTCCTTTCTTAAGATT 235038 Query 37299 ATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCT 37356 | ||||||||| | | | ||| || | || |||||| ||| ||||||||||||| Sbjct 235039 -TCCCAATCCCACATACCAAATGGCTTAGCGTT--CCACATGTCAAATTGTAGAATACCC 235095 Query 37357 TTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAA 37416 ||| ||||||||| | | | || ||| || | | | || | ||| || Sbjct 235096 TTAGAGGCTGGAGAACCTTCGAAAGTGGAATACTTACCTTCCTTCTGTGCCAATTCACAG 235155 Query 37417 CTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476 | ||| || | |||| ||| || ||||||||||| ||| | || || ||| ||| Sbjct 235156 GAGGCTTCAAGAGTAGCATGATAGATGGTTTCGAAAATCTGTTTGTTCAAAGTTTGAGCT 235215 Query 37477 TCTTCGCTATCGAATGCATAGCC-CAATAATATAAACACATCAGCCAAACCCTGAACACC 37535 ||||| | || || | ||| | ||| | ||| | ||| |||| ||| |||||||| Sbjct 235216 TCTTC-CGATTCAAAGGGTAGACGCAACATCATATAGGTATCGGCCAGACCTTGAACACC 235274 Query 37536 GATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATT 37595 | | || |||||||| ||| |||| || | | ||| |||||||||||||| Sbjct 235275 CAAGGCAATAGGTCTATGCTTCATATTTGAATTTCTGGCTTCAGGAACTGGATAATAATT 235334 Query 37596 GATATCTATTATTTTATTTAGATTTTTAACTAGTATTTTCGTAATTAT-TCTCAACTTGT 37654 ||| || | | | || | || | | || ||| | |||| | | |||| | Sbjct 235335 ACGATCGATGACTCTGTTCAAGTTATGGGTAATTACTTTAGCAATTTCATGTAAACTC-T 235393 Query 37655 CGAACATAAATACGTT-ATTATTAACAAATTTA-----CTCAACGAA------------- 37695 |||| || | || | | | ||| || || | ||| || || Sbjct 235394 CGAAATTATA-ACTTGCAGTTTTACCATCTTCAGACATCTCGACAAATGCTGGGAGGGCA 235452 Query 37696 ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGTA 37755 ||||| |||||||||| || || ||||||| | | | | | || || | Sbjct 235453 ATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAGGAATACTCGACGATTTCACAA 235512 Query 37756 CAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGAA 37815 || | ||| ||| |||| || ||||| || ||| || | ||| ||||||| || Sbjct 235513 CACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTATTACATGAG 235572 Query 37816 TCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCAT 37875 || || || | || | || || ||| |||| |||| || | | ||| | | |||| Sbjct 235573 TCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATTGCATACCAT 235632 Query 37876 AAACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTGTTTCGTATTCTATATATA 37933 || || || |||| | | |||| | ||| | |||||| |||||| Sbjct 235633 AACTTTTGGGCCTTAATGGT---TTTACCACGACCTTCCCT--TTCGTAACGGGTATATA 235687 Query 37934 ATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATTA 37993 | | ||| |||| ||||| ||||| ||| ||||| | | ||| | | || Sbjct 235688 GCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAAAATA 235747 Query 37994 GAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAG 38053 || ||| |||| | || || |||| |||||| | ||||| | ||| | |||| Sbjct 235748 AAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCAG 235807 Query 38054 TAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAAT 38113 || ||||| | | | |||||| || || | ||||| | | ||| | Sbjct 235808 GGAACAAATCCCTTGCACGGATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAGT 235867 Query 38114 CGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCAC 38173 |||| ||||| || ||||||||||| | ||| | | || || ||||| || | || Sbjct 235868 CGAAGATATCTGCATGCCATGGTTCCAAGAAAAGGGCAAAGGCGCCAGGTCTCTTGTTAC 235927 Query 38174 CTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCAT 38233 |||| || | | ||| | | | || || || | | | | |||||| | | |||| Sbjct 235928 CTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGGATCATAGGAATCAACCCAT 235987 Query 38234 TAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACA 38293 | || | ||||| |||||| ||||||| ||| | | || || || | || | Sbjct 235988 TTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGAA 236047 Query 38294 ATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATAC 38353 || | ||||||||| || || || | ||| |||| ||| || |||||| | |||| Sbjct 236048 GACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAAATAC 236107 Query 38354 CTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAG 38413 |||| ||| ||||||||| || | | || ||||| ||||||||| || ||||| Sbjct 236108 CTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGATGTGGAG 236167 Query 38414 TTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTAT 38473 | || ||||| ||||| || || || || || |||| || || ||||| |||| | Sbjct 236168 TACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAACGACATCAAATTGT 236227 Query 38474 ATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCA 38533 | || | | ||| || ||||||| ||||| ||||| || | || | ||| | || Sbjct 236228 AGGTCTTCAGCACAGACTCAATATCACTACCGTGGATACCCAGCGCCACACGCATAACCA 236287 Query 38534 TATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATG 38593 || ||||| | ||| | || | ||| || | || | |||||| || || | Sbjct 236288 AGTGCTGTGGCCGTTCAGCCACTTCACCGTTCAGTCTTAGCAAATACGAACGCTCCAAAG 236347 Query 38594 TTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTA 38633 | || | |||||||| |||| |||| |||||||||||| Sbjct 236348 TCTTGAACCCAAAATACGTATACTTGAA--ATCTCTATCGTA 236387 >seq5 Length=577572 Score = 172 bits (190), Expect = 5e-38 Identities = 413/622 (66%), Gaps = 2/622 (0%) Strand=Plus/Minus Query 38013 TTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTTTGGTTCT 38072 ||| || || | ||| || | |||||| | ||| | |||| ||| |||||| | | | Sbjct 305791 TTCGACACGCTTCATGAAAAGATCAGGAATCCACAGAGCAGGAAACAAATCTCTTGCACG 305732 Query 38073 ATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAGCGTGCCA 38132 | |||||| || || |||||||| | | |||||| || |||||||| ||||| Sbjct 305731 AATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAGATATCAGCATGCCA 305672 Query 38133 TGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAATATATCT 38192 |||||| | || | | | || || |||||||| | ||| ||||| | | ||| | Sbjct 305671 TGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCCTGGTCGACATAACG 305612 Query 38193 AACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGTTTATACC 38252 | || |||||| | | | | ||| || | || || ||||| | |||||| |||| Sbjct 305611 GGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAAGTACCGTTTGTACC 305552 Query 38253 GGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCACCTGCATG 38312 | || |||| ||| | | || || ||| || | || || ||||| ||| Sbjct 305551 AGCAATGTAAGAACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGT 305492 Query 38313 TTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGTCATCCTT 38372 ||| || || ||||| |||| ||| || || || | ||||| || ||| ||| ||||| Sbjct 305491 TTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTT 305432 Query 38373 TATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAAATAATGT 38432 || | | | |||||| ||||||||||| |||||| || || ||||| || || Sbjct 305431 CATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGT 305372 Query 38433 AGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTACATCATC 38492 ||||| ||||| | || ||||| |||| | ||||||||||||| || | || Sbjct 305371 TGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCAGCTTC 305312 Query 38493 TATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTCTTTCTAT 38552 || || | ||||| || || || | || ||||| | | |||||||| | ||| Sbjct 305311 GATGTCTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGGC 305252 Query 38553 TATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAAAATAACT 38612 | || || | | |||| ||| || ||| || ||||| | ||||||||||| Sbjct 305251 CACTTGGCCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTGAAACCAAAATAACT 305192 Query 38613 ATA-TGAATAATCTCTATCGTA 38633 || || | ||||||| || || Sbjct 305191 GTACTGGA-AATCTCTGTCATA 305171 Score = 165 bits (182), Expect = 8e-36 Identities = 534/817 (65%), Gaps = 19/817 (2%) Strand=Plus/Minus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 ||||| | || ||||||| || ||||| || || || | ||| |||| |||||| Sbjct 307008 GATGCGGCTTGGGTTCTCAAGTAGTACATACCGGTCTTCAATCCCTTCTTCCACCCGTAA 306949 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933 ||||||||||| || || || | || || | | ||| ||| || ||| Sbjct 306948 AAATGCATACTTGTTAGCTTACCCATAGTTGGGGCACGCAAGAATAAATTCAAGGAATGA 306889 Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993 ||| || ||| | || | |||||||||||| | | ||| ||||| || || Sbjct 306888 GATTGGTCGATATAAACAGAACGGTCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATT 306829 Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATA 37050 ||||| || ||||| |||| | || | | | ||| | || | ||| |||||| Sbjct 306828 TCCCAGACAGTTTTGTATAAGTCCTTCAATTCTTGTGGAACATTTGGTAAACCTTGAATG 306769 Query 37051 GAACCATTATGTAACA-CAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACTTA 37108 || || || ||| | ||| | | | ||| || | | || ||| ||| | | | Sbjct 306768 GAGCCGTTCTGTGTAATCAAAT--ACTGTTTCATACCCTCATCCCAAATACCTAAATCAA 306711 Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 | || | || || || || || ||||| || || || || ||||| || | | | Sbjct 306710 CCAAATCGCGCAGTAAGTAAGGGTTCACAACTTGGAATTCACCGGATAAGACACGACGGG 306651 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 || || ||| ||| |||||||| | ||||||| || |||||||| ||||| | Sbjct 306650 AGTACATGTTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGG 306591 Query 37229 ATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGTATTAATTCT 37286 |||| |||||||||||||| || | ||| ||||| | |||||| | | | | | Sbjct 306590 ATGCGGTAGGCATTGGTGCCATGGTCAAAG--AGTTTCTAATACCATGTTTCATGA-TAT 306534 Query 37287 CTTTTTT---AGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTA-ACCACATATCAT 37342 |||| | ||| | ||||||||| | | || ||||| || | ||||||||| Sbjct 306533 CTTTCCTCAAAGT--GTCCCAATCCCA-CATGCCGTAGGGTTTTTGATCCCACATATCGA 306477 Query 37343 ATTGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTT 37402 | || || ||||||| | ||||||||| | | | || || || || |||| ||| Sbjct 306476 ACTGAAGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGGCCGTCCTTTT 306417 Query 37403 TAGCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATAT 37462 ||||||||| ||| || ||| | | ||||| ||| |||||||| || ||||| |||| Sbjct 306416 GAGCTAGTTCACAAGAAGCTTCCATGGAGGCATGATAAATTGTTTCAAATATTTGGATAT 306357 Query 37463 TTAATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCA 37522 ||| || || ||||| ||| || | | | | || ||||| ||||| | Sbjct 306356 TTAGTAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATAAAAGTGTCAGCTA 306297 Query 37523 AACCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCA 37582 |||| |||||||| | | || ||||||||| || |||| ||||| || |||| | Sbjct 306296 AACCTTGAACACCCAAGGCAATTGGTCTATGTCTCATATTGGATCTTCTCGCTTCTTCAA 306237 Query 37583 CTGGATAATAATTGATATCTATTATTTTATTTAGATT 37619 | || || ||||| ||| || | | | |||| ||| Sbjct 306236 CAGGGTAGTAATTACGATCAATAACTCTGTTTAAATT 306200 >seq10 Length=751133 Score = 140 bits (154), Expect = 3e-28 Identities = 395/601 (66%), Gaps = 22/601 (4%) Strand=Plus/Minus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| ||| || ||||| || || |||||||||||||| | || | ||| ||||| Sbjct 380507 AACAATAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAG 380448 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || || || ||||||| |||| || || | ||| || || | || || ||||| Sbjct 380447 AAGGTCAAACCTGGCATCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCG 380388 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG 11800 || ||||| | || || | || ||||| || |||| |||||| ||| | | || Sbjct 380387 GAGAAGAAGACACCTTCGATAGAAGCAAAGGCGACTAGTCTTTCACCAAACAAGGCGTCA 380328 Query 11801 ----CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----ATTG 11852 || || |||||| || ||||| || || |||| || ||| | || | Sbjct 380327 GCGTCTTGA-ATCCATCTTAGAGCCCACTCGGCCTTCTC----ACCGATTTCTGGGATAG 380273 Query 11853 TTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTAT 11910 | | || || || || || | ||| |||| || || | | || ||||| || Sbjct 380272 TGTGAATGGCATTGAACAA--GAATTCACTTTCCTTAGGGTCCTTGATGTAGGTATCGAT 380215 Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 ||||| || |||| |||||||||||||| || ||||| || |||||||||| Sbjct 380214 CAATAAGGAGTAAGTTTCAGAATGAATATTTTCAATCATGATTTGGAAACCATAGAAACT 380155 Query 11971 TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT 12030 |||||||| | || || || | || |||| | || || ||||| ||||| Sbjct 380154 CTTTGCCTCTGGAATTTGAACTTCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 380095 Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090 ||| ||| || || ||||| || || | ||||| || | |||| ||| || Sbjct 380094 ACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTAGAAATAAAAAATCTCTCGT-TTTCGT 380036 Query 12091 TAAT----TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 | || || | ||| |||| | ||| || || ||||| | ||||||| ||||||| | Sbjct 380035 TCATTCTGTTGTTCCAGTCATGAATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGA 379976 Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206 || || | | | ||||| || ||| || ||||| ||||| |||||||||| || Sbjct 379975 AAGAGGCTTCGGCACGCTTATAAGCTTGCCAAATTTCATGGTACTTGATAGGGAAAAGAA 379916 Query 12207 C 12207 | Sbjct 379915 C 379915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524700438480