Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq14 95.1 1e-14 >seq14 Length=872155 Score = 95.1 bits (104), Expect = 1e-14 Identities = 160/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | || ||||| || | ||||| ||||| |||||||||||||| | Sbjct 56886 CCACCTCTCAATCTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCAGAC 56945 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | || || ||||| || || ||||| ||| | |||| | || || || ||||| Sbjct 56946 AGCGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGA 57005 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||||| || | | || | ||||||| | || || Sbjct 57006 ATACCTTCTTTGTC-CTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 57064 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||| | ||| | || ||||| || | ||||| || || ||||||||| Sbjct 57065 CTCTAGGGTTATAGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCATA 57113 Score = 86.0 bits (94), Expect = 6e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 139568 GTAGACTCTTTTTGAATGTTATAATCGCTCATTGTGCTCGAGTCTTCGAGCTGTTTACCA 139627 ||||| || ||||||||||| || ||| | ||| || ||||| || |||||||| Sbjct 56688 GTAGATTCCTTTTGAATGTTGTAGTCGGATAATGTTCTACCATCTTCCAGTTGTTTACCG 56747 Query 139628 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTGATTTTTTG-TTT 139686 ||| | |||| | || || || ||||| || ||||| || || ||| |||||| || Sbjct 56748 GCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATC-TTGAATTTTTGACTT 56806 Query 139687 TAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACCGTCTTGCCGGTCAACGT 139746 | | || | ||||||| | || ||||| | ||| | ||||| || |||| ||| Sbjct 56807 GACGTTGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTTATAGTCTTACCAGTCAGCGT 56866 Query 139747 TTTTACGAATATTTGCATA 139765 || ||||| || |||||| Sbjct 56867 CTTAACGAAGATCTGCATA 56885 Score = 86.0 bits (94), Expect = 6e-12 Identities = 158/229 (69%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || |||| || | || ||||| || | ||||| ||||| |||||||||||||| | Sbjct 57342 CCACCTCTCAATCTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCAGAC 57401 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | ||| || ||||| || || ||||| ||| | |||| | || || || ||||| Sbjct 57402 AGTGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGA 57461 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCAC 139716 || ||||||||||| ||| |||||| || | | || | || || | | || || Sbjct 57462 ATACCTTCTTTGTC-CTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGAC 57520 Query 139717 CTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 || | || | || || |||||||| || || || || ||||||||| Sbjct 57521 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCATA 57569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063894586400