Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_004117.1 Length=158482 Score E Sequences producing significant alignments: (Bits) Value seq14 100 3e-16 seq15 91.5 1e-13 seq12 86.0 6e-12 >seq14 Length=872155 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | || |||||||| | ||||||||||| || ||||| ||||| | Sbjct 57342 CCACCTCTCAATCTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCAGAC 57401 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | ||| || ||||| ||||| ||||| ||| | |||| | || || || ||||| Sbjct 57402 AGTGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGGA 57461 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||||| || | | || | || || | | ||| ||| Sbjct 57462 ATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGACT 57521 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || || |||||||| || || || || ||||||||| Sbjct 57522 TCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCATA 57569 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | || |||||||| | ||||||||||| || ||||| ||||| | Sbjct 56886 CCACCTCTCAATCTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCAGAC 56945 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||| ||||| ||| | |||| | || || || ||||| Sbjct 56946 AGCGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGA 57005 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||||||||| ||||||| || | | || | ||||| | | ||| || Sbjct 57006 ATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAACC 57065 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | || | || ||||| || | ||||| || || ||||||||| Sbjct 57066 TCTAGGGTTATAGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCATA 57113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || |||| ||||| || ||||| || ||||||||| Sbjct 57114 CCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAATCGGAT 57173 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| ||||||||||| ||| | |||| | || || || ||||| Sbjct 57174 AACGTTCTGCCATCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGA 57233 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| || || ||||||| || | | || | |||||| | | ||| || Sbjct 57234 ATACCTTCCTTATCTTGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCGACC 57293 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCATA 143185 || | ||| | ||||| || |||| || || || || || |||||| Sbjct 57294 TCCAGAGTAATAGTCTTACCAGTCAGCGTCTTGACAAAGATCTGCATA 57341 Score = 82.4 bits (90), Expect = 8e-11 Identities = 137/198 (69%), Gaps = 0/198 (0%) Strand=Plus/Plus Query 142988 GTAGATTCTTTTTGTATGTTGTAATCGCTCATTGTGCTCGAGTCTTCGAGTTGTTTACCA 143047 |||||||| ||||| |||||||| ||| | ||| || ||||| ||||||||||| Sbjct 56688 GTAGATTCCTTTTGAATGTTGTAGTCGGATAATGTTCTACCATCTTCCAGTTGTTTACCG 56747 Query 143048 GCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTGTCGGTAATTTTTTGTTTT 143107 ||| | |||| | || || || ||||| || ||||| || || ||||||| || Sbjct 56748 GCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGAATTTTTGACTTG 56807 Query 143108 AGCTGTTCCACCGTGTCCGTGGGTTCTACTTCAACAGTCACCGTCTTGCCGGTCAATGTT 143167 | | || | ||||| | | ||| || || | || | ||||| || |||| || Sbjct 56808 ACGTTGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTTATAGTCTTACCAGTCAGCGTC 56867 Query 143168 TTTACGAATATTTGCATA 143185 || ||||| || |||||| Sbjct 56868 TTAACGAAGATCTGCATA 56885 >seq15 Length=1201643 Score = 91.5 bits (100), Expect = 1e-13 Identities = 151/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| ||||| || | || ||||||||||| |||||||| || | Sbjct 71305 CCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 71246 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || |||||| | ||| ||||||||| |||||| | ||| || || || || Sbjct 71245 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 71186 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| ||| ||| || | | || | ||||| | | ||| ||| Sbjct 71185 ATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 71126 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAA 143175 || | ||| | ||||| || ||||| || || || || Sbjct 71125 TCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 71088 >seq12 Length=1068413 Score = 86.0 bits (94), Expect = 6e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 142958 CCTCCTCGTAAACGCAAAACTAAATGAATTGTAGATTCTTTTTGTATGTTGTAATCGCTC 143017 || |||| || | ||| || || || | || ||||||||||| |||||||| || | Sbjct 493812 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCTTTTTGGATGTTGTAGTCAGAC 493753 Query 143018 ATTGTGCTCGAGTCTTCGAGTTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 143077 | || || ||||| | ||| ||||||||| |||||| | ||| || || || || Sbjct 493752 AAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 493693 Query 143078 ATGCCTTCTTTGTCGGTAATTTTTTGTTTTAGCTGTTCCACCGTGTCCGTGGGTTCTACT 143137 || ||||| ||||| || || || | | || | ||||| | | ||| ||| Sbjct 493692 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 493633 Query 143138 TCAACAGTCACCGTCTTGCCGGTCAATGTTTTTACGAATATTTGCAT 143184 || | || | ||||| ||||| || || || ||||| |||||||| Sbjct 493632 TCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 493586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 507014292259440