Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_005068.1 Length=110907 Score E Sequences producing significant alignments: (Bits) Value seq14 123 2e-23 seq12 100 2e-16 seq15 89.7 4e-13 >seq14 Length=872155 Score = 123 bits (136), Expect = 2e-23 Identities = 164/228 (72%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| | ||| ||||| | || ||||| ||||| |||||||| Sbjct 57341 ACCACCTCTCAATCTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCAGA 57400 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | | |||| |||| ||| || || ||||| ||||||| || ||||| |||| Sbjct 57401 CAGTGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAGG 57460 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| || ||||||| ||||| || ||| ||||| | | || || Sbjct 57461 AATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGAC 57520 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||||||||| |||||||| ||||| |||||||| Sbjct 57521 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 57568 Score = 114 bits (126), Expect = 9e-21 Identities = 162/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || ||||| || || || ||| ||||||||||| |||||| Sbjct 57113 ACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAATCGGA 57172 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 ||| | |||| |||| |||||| || ||||| ||||| | || ||||| |||| Sbjct 57173 TAACGTTCTGCCATCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGG 57232 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| |||||| ||||||| ||||| | | | || || | | || || Sbjct 57233 AATACCTTCCTTATCTTGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCGAC 57292 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || ||||| || | ||||| ||||| || ||||| Sbjct 57293 CTCCAGAGTAATAGTCTTACCAGTCAGCGTCTTGACAAAGATCTGCAT 57340 Score = 96.9 bits (106), Expect = 2e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| | ||| ||||| | || ||||| ||||| |||||||| Sbjct 56885 ACCACCTCTCAATCTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCAGA 56944 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 | | |||| |||| ||| || || ||||| ||||| | || ||||| |||| Sbjct 56945 CAGCGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGG 57004 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | ||||||||| || ||||||| ||||| | ||| ||| || | | || || Sbjct 57005 AATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 57064 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | || || ||||| || |||| ||| || ||||| |||||||| Sbjct 57065 CTCTAGGGTTATAGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCAT 57112 >seq12 Length=1068413 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || ||||| || | ||| |||||||| || || || || Sbjct 493813 ACCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCTTTTTGGATGTTGTAGTCAGA 493754 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | |||| |||||||| || || ||||| ||||| | ||| ||||| | || Sbjct 493753 CAAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 493694 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| || || ||||| | ||| ||| || | | || || Sbjct 493693 GATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 493634 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAATATTTGCAT 44121 || | ||||| || ||||||||||||||||| || || |||||||| Sbjct 493633 TTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 493586 >seq15 Length=1201643 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 43894 ACCTCCTCTCAATCTTAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTATAATCGTT 43953 ||| ||||||||||| || || || |||| ||| ||||||||||| || || || Sbjct 71306 ACCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAGA 71247 Query 43954 TAATTGACGCTCATCGTCCAATTGTTTTCCTGCAAATATCAACCGTTGCTGGTCCTGAGG 44013 || | | || |||||||| || || ||||| ||||| | ||| ||||| | || Sbjct 71246 CAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 71187 Query 44014 TACACCTTCTTTATCTGAAATTTTTTGTTTGACCATAGCAACAGTATCTGCCGGCTCCAC 44073 | |||||| || ||| ||| ||| ||||| | ||| ||| || | | || || Sbjct 71186 GATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 71127 Query 44074 ATCGACCGTAATTGTTTTACCGGTTAAAGTCTTCACAAA 44112 || | || || || ||||| || |||||||| ||||| Sbjct 71126 TTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 71088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 354777526494516