Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq15 132 6e-26 seq2 102 1e-16 >seq15 Length=1201643 Score = 132 bits (146), Expect = 6e-26 Identities = 301/451 (67%), Gaps = 35/451 (8%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||||||| | |||| || || || ||||| ||| ||||| || || |||||||| Sbjct 565278 TTGTTCTTTCAAGGCTTCAATGTGGTCCTTATAAACATGTGCATCCCCCAGAGTATGAAT 565337 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||| |||||||| | ||| || ||| ||| |||||| | || || | ||||| || Sbjct 565338 AAACTCACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAGAGCATATGA 565397 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTG--ATAACA---TTGA 6984 || | |||||| ||||| || || ||||| || || | ||| |||||| ||| Sbjct 565398 TGCAATATTAAATGGTACGCCCAACCCCATGTCACAAGAACGTTGGTATAACAAACATGA 565457 Query 6985 CAAG------ATAAAATAT-TGTCT---------------ATAGCATAAAATTGACACAA 7022 | | || | || |||| | |||||||||| | || Sbjct 565458 AAGGTGGGGCTTACCAGATCCGTCTCCTTCTTTGGGGAAACTGACATAAAATTGTGAGAA 565517 Query 7023 TACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAA 7082 | || ||||| || ||| | || || | ||||| ||| ||||||||| |||| | Sbjct 565518 AATGTGGCATGGTGGCAAAGCCATCTTGTCAAAATCAGCTGGGTTCCAAGCACTCATAAT 565577 Query 7083 AATACGTCTATCATTTGGATTTGTTTTTAATTT-TGTTATAATTATTTG---TAATTGAT 7138 ||| | |||||||| |||||||| |||| ||| || ||| | || ||||||| Sbjct 565578 AATTCTTCTATCATAAGGATTTGTCTTTAGTTTATG----AATGACCTGCTTCAATTGAT 565633 Query 7139 CTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCC 7198 | |||||||| || |||| | || ||| | | || ||||| || ||||| |||| Sbjct 565634 CAATACCCTGTCCAGCATAGTCGTCATCACAGGTCTTGTATTTAGCACCGAAATGCCTCC 565693 Query 7199 ATTGAAACCCATAAATAGGACCTAAATCACC 7229 |||| || ||||||| || |||||||| || Sbjct 565694 ATTGGAATCCATAAACGGGCCCTAAATCCCC 565724 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 |||||| || ||||| || | || | ||| |||| ||||| || ||||| ||| | Sbjct 707374 GTTAAAGTTCGTGTAAGAACTACGAAGGTTCCTCAAATTGGTGACAAATTTGCCTCTCGT 707315 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||| || || |||||| | |||||| |||||||||||| ||||| | Sbjct 707314 CATGGTCAAAAGGGTACCATTGGTATCACATATCGTAGAGAAGATATGCCATTTACAGCA 707255 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| || |||||| | || || || || || ||| ||||| ||| ||||| Sbjct 707254 GAAGGTATTGTTCCGGATTTAATCATCAATCCTCACGCTATTCCATCTCGTATGAC 707199 >seq2 Length=731301 Score = 102 bits (112), Expect = 1e-16 Identities = 251/377 (67%), Gaps = 18/377 (5%) Strand=Plus/Minus Query 164605 AAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT 164664 ||||| || || ||||||||| | |||| || || || ||| ||||| | ||| || Sbjct 399948 AAAATCGTCAACGGTCCTGAAATTTTGAGTAAGTACGTTGGTTCTTCAGAGGAGAATATT 399889 Query 164665 AGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGAAAGC--AGGTTTAGCTAGTAAA- 164721 | || || ||| |||| || |||| |||| | | || ||| | || | | Sbjct 399888 CGTAATTTATTTAAGGATGCCGAAGCAGAATATCGG---GCCAAGGGTGAGGAATCATCC 399832 Query 164722 TTACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAA---------ACGTGGT 164772 |||||| | ||| |||| ||||| | ||| || ||| ||| | | | ||| Sbjct 399831 TTACATATCATTATTTTCGATGAACTGGATTCTGTTTTCAAGCAGAGAGGTTCAAGAGGT 399772 Query 164773 GATAATATTATTCATGATG-CAGTG--GTTAATCAGTTGCTTTCTAAAATAGATGGTGTA 164829 ||| || | | || || || |||||||| || | |||| || |||||||| Sbjct 399771 GATGGTACCGGTGTAGGTGACAATGTAGTTAATCAATTATTAGCTAAGATGGATGGTGTT 399712 Query 164830 GAATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGAT 164889 || || |||||||| || || | |||||||||||||| |||||||| ||| | Sbjct 399711 GATCAATTGAATAATATATTGGTTATTGGTATGACCAACCGTAAGGATTTAATAGATAGT 399652 Query 164890 GCTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAA 164949 ||| | ||||| || ||| |||| ||| | || | ||||| ||||| ||| || || Sbjct 399651 GCTCTTTTACGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTCATTTACCGGACGAAAAA 399592 Query 164950 GGACGCCTTCAAATTTT 164966 ||| | || |||||||| Sbjct 399591 GGAAGGCTCCAAATTTT 399575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871873377200