Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq14 145 6e-30 seq15 107 2e-18 seq12 87.8 2e-12 >seq14 Length=872155 Score = 145 bits (160), Expect = 6e-30 Identities = 170/230 (74%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | ||||| |||||||| | ||||||||||| |||||||| ||||| Sbjct 56883 ATACCACCTCTCAATCTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCA 56942 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | | |||||| ||||| ||||| || | || | | ||||||||| ||| Sbjct 56943 GACAGCGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGA 57002 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| ||| || | | |||| ||||||| ||||| Sbjct 57003 GGAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCA 57062 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || | ||| | |||||||| || |||||||| |||||||| ||||| Sbjct 57063 ACCTCTAGGGTTATAGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCAT 57112 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | ||||| |||||||| | ||||||||||| |||||||| ||||| Sbjct 57339 ATACCACCTCTCAATCTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCA 57398 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | | |||||| ||||| ||||| || | || | | ||||||||| ||| Sbjct 57399 GACAGTGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGA 57458 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||||||||| ||| ||| || | | |||| ||| || | |||||| Sbjct 57459 GGAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCG 57518 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | ||||| ||||||| ||| || |||||||| ||||| Sbjct 57519 ACTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 57568 Score = 113 bits (124), Expect = 4e-20 Identities = 143/197 (73%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 |||||||| |||||||||||||| ||| | || | | |||||| ||||||||||| Sbjct 56688 GTAGATTCCTTTTGAATGTTGTAGTCGGATAATGTTCTACCATCTTCCAGTTGTTTACCG 56747 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || | || | | ||||||||| |||||||| ||||| || || ||| ||| || Sbjct 56748 GCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGAATTTTTGACTTG 56807 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||||| |||||||| || | ||| | || || || ||||| || Sbjct 56808 ACGTTGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTTATAGTCTTACCAGTCAGCGTC 56867 Query 114366 TTTACAAAAATCTGCAT 114382 || || || |||||||| Sbjct 56868 TTAACGAAGATCTGCAT 56884 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | |||||| || || || | ||||| || |||||||| ||||||||| Sbjct 57111 ATACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAATCG 57170 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 | || | |||||| ||||||||||| || | || | | ||||||||| ||| Sbjct 57171 GATAACGTTCTGCCATCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGA 57230 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 ||||| ||||| || || ||| ||| || | | || | ||||||| |||||| Sbjct 57231 GGAATACCTTCCTTATCTTGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCG 57290 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || |||| || | || || || ||||| || || ||||| |||||||| Sbjct 57291 ACCTCCAGAGTAATAGTCTTACCAGTCAGCGTCTTGACAAAGATCTGCAT 57340 >seq15 Length=1201643 Score = 107 bits (118), Expect = 2e-18 Identities = 157/222 (71%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 114153 ATACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCG 114212 ||||| || | | |||||| ||||| |||| || |||||||||||||||||||| || Sbjct 71308 ATACCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCA 71249 Query 114213 CTCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGA 114272 || || | | ||||| | ||| |||||||| |||| | | |||||||| || Sbjct 71248 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 71189 Query 114273 GGAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCG 114332 || || ||||| ||||| ||||||| || | | |||| ||||| | ||||| Sbjct 71188 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 71129 Query 114333 ACGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAA 114374 || |||| || | || || || |||| ||| || |||||| Sbjct 71128 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 71087 >seq12 Length=1068413 Score = 87.8 bits (96), Expect = 2e-12 Identities = 149/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 114167 TCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGA 114226 |||||| || || || | || ||||||||||| |||||||| || || || | Sbjct 493801 TCTCAAGACCAAGTGCAAAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTTCTGCC 493742 Query 114227 ATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTT 114286 |||||| | ||| |||||||| |||| | | |||||||| || || || ||||| || Sbjct 493741 ATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTT 493682 Query 114287 GTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCAC 114346 ||| ||||| || | | |||| ||||| | ||||| || || | ||| | Sbjct 493681 GTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAAT 493622 Query 114347 CGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || || ||||| | ||| || || ||||| ||||| Sbjct 493621 AGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 493586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420134312953404