Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq15 197 2e-45 seq5 194 2e-44 >seq15 Length=1201643 Score = 197 bits (218), Expect = 2e-45 Identities = 791/1233 (64%), Gaps = 38/1233 (3%) Strand=Plus/Plus Query 116064 CCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGG 116123 |||||| ||||| || || ||||| | || ||||| || || || || || ||| Sbjct 235071 CCACATGTCAAATTGTAGAATACCCTTAGAGGCTGGAGAACCTTCGAAAGTGGAATACTT 235130 Query 116124 GCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAA 116183 || || || |||||||| || || || || | || ||||| || || || || Sbjct 235131 ACCTTCCTTCTGTGCCAATTCACAGGAGGCTTCAAGAGTAGCATGATAGATGGTTTCGAA 235190 Query 116184 AATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAA 116243 ||| | |||| | | || || || || ||||| | ||||| ||| ||| | Sbjct 235191 AATCTGTTTGTTCAAAGTTTGAGCTTCTTCCGATTCAAAGGGTAGACGCAACATCATATA 235250 Query 116244 TACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCG 116303 ||| || |||||||| ||||| | | |||| || | ||| ||||||| || |||| Sbjct 235251 GGTATCGGCCAGACCTTGAACACCCAAGGCAATAGGTCTATGCTTCATATTTGAATTTCT 235310 Query 116304 AGCGGTCTCCACGGGATAAAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAAC 116363 || || |||||| |||| | |||||| || || || | || | ||| | || Sbjct 235311 GGCTTCAGGAACTGGATAATAATTACGATCGATGACTCTGTTCAAGTTATGGGTAATTAC 235370 Query 116364 CTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCT------CTTCA----- 116412 || | |||||||| | | ||| ||| | |||| ||| | ||||| Sbjct 235371 TTTAGCAATTTCATGTAAACTCTCGAAATTATAACTTGCAGTTTTACCATCTTCAGACAT 235430 Query 116413 -TTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATC 116471 | |||| | || ||||| || || || |||||||| || | ||| ||||| Sbjct 235431 CTCGACAAATGCTGGGAGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGA 235490 Query 116472 AGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTG 116531 | ||||| | ||||| ||||||||| || |||||||| |||||||||| ||| Sbjct 235491 GGAATACTCGACGATTTCACAACACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTG 235550 Query 116532 ATTTGACTTTGTGTTACACGCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTG 116591 |||| |||| | ||||| | |||||||| | ||| | || || || || || ||||| Sbjct 235551 GTTTGTCTTTCTATTACATGAGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTG 235610 Query 116592 GGACTTG-AGAATAGCCTTCCATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCT 116650 | |||| | ||| || | ||||| | ||| | | ||| || | || || | Sbjct 235611 TG-CTTGTAAAATTGCATACCATAACTTTTGGGC---CTTAATGGTTTTACCACGACCTT 235666 Query 116651 CCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCC---ACAGCCTCTGAGAGCC 116707 || ||||| || || || | ||||| || |||||| ||| | ||| | | Sbjct 235667 CCCTTTCGTAACGGGTATATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAA---C 235723 Query 116708 CTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGA 116767 |||| || | ||| | || | || ||| | ||| |||| | ||| || ||||| | Sbjct 235724 CTGGGGCAGCACTGGGAGAAAATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAA 235783 Query 116768 AGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCT 116827 | ||||| || ||||| || || | ||| | ||||| || |||||| | || | Sbjct 235784 AAAGGTCAGGAATCCACAGAGCAGGGAACAAATCCCTTGCACGGATTTCTTCTTTACCAT 235843 Query 116828 GATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCG 116887 | | | | || | |||||| | |||||| || ||||| ||||||| | | | | Sbjct 235844 GGGTTTTTCTAATATCGACAAAGTCGAAGATATCTGCATGCCATGGTTCCAAGAAAAGGG 235903 Query 116888 CGATTGACCC------CTTGCGACGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAA 116941 | | | || |||| || || |||| ||||| | || || ||| | Sbjct 235904 CAAAGGCGCCAGGTCTCTTGTTACCTCCT---TGGTCCACATAACGAGCAGTATTGTTGA 235960 Query 116942 ATACGCGAAGCATTGGAATGATACCATCAGATTGGCCATTTGTCCCC-CGA-ATACGAGA 116999 | || || | ||| ||||| | |||| || || || || || ||| ||| || | Sbjct 235961 AAACACGGATCATAGGAATCAACCCATTTGAAGTACCGTTGGTACCGGCGATATAAGA-A 236019 Query 117000 CTTGTTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTG 117059 | ||| || | || | || || || | ||||| ||| ||||| ||| || || Sbjct 236020 CCTGT-GGAACGGATGTTGTTAATATGAAGACCAACACCACCTGCAGTCTTGGAAATCAT 236078 Query 117060 TGCGCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAG 117119 || || || | | | | | || || || || || |||||| |||| | || || || Sbjct 236079 AGCACATTCTTTCAAAGTATCATAAATACCTTCAATAGAGTCATCCTTCATGGCAATTAG 236138 Query 117120 GAAGCAGCTCGACATTTGTGGCCTTGGTGTACCAGCGTTGAAGAGGGTTGGTGTCGCGTG 117179 ||| || |||||||| || ||| |||||||||||||| | |||||| | ||||| Sbjct 236139 GAAACATGAAGACATTTGGGGATGTGGAGTACCAGCGTTGAATAAGGTTGGGGAAGCGTG 236198 Query 117180 GATGAACATACCTT-GGGACATCTTATCGTAGGTCTCCAAGACAGAGGGAATGTCTTCCC 117238 |||| ||| ||| |||||| || |||||||| || ||||| ||| || | Sbjct 236199 AGTGAA-ATATCTTAACGACATCAAATTGTAGGTCTTCAGCACAGACTCAATATCACTAC 236257 Query 117239 CGTGAATACCGATTGAGACCCGCATAAACATGT 117271 |||| ||||| | | || ||||||| || || Sbjct 236258 CGTGGATACCCAGCGCCACACGCATAACCAAGT 236290 >seq5 Length=577572 Score = 194 bits (214), Expect = 2e-44 Identities = 821/1287 (64%), Gaps = 26/1287 (2%) Strand=Plus/Minus Query 115903 TAGATGTTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 115962 || ||||||| || ||| ||||| || ||||| | |||||| ||||||| |||||| Sbjct 306648 TACATGTTGGAGGTAACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGGAT 306589 Query 115963 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTGCGGAGACCCACCCCCCTAATGCGTTCC 116022 || || ||||| ||||||||| | ||| | | ||| | | || || | Sbjct 306588 GCGGTAGGCATTGGTGCCATGGTCAAAGAGTTTCTAATACCATGTTTCATGATATCTTTC 306529 Query 116023 TTGAGGGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTCCCACATATCAAACTGGAGG 116082 | | | |||||| || | || | | | ||||||||||| ||||| || Sbjct 306528 CTCAAAGTGTCCCAATCCCACATGCCGTAGGGTTTTTGATCCCACATATCGAACTGAAGT 306469 Query 116083 ATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAAT 116142 |||||||| || ||||| || || | || || || |||||||| || | || | | Sbjct 306468 ATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGGCCGTCCTTTTGAGCTAGT 306409 Query 116143 TCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCC 116202 || | || || | || || ||||| ||||| ||||| || | ||| | | Sbjct 306408 TCACAAGAAGCTTCCATGGAGGCATGATAAATTGTTTCAAATATTTGGATATTTAGTAAA 306349 Query 116203 TTGGCCTCGTCGGAATCAAACGCGAGACGGCACAAAATAAATACATCCGCGAGACCTTGG 116262 |||||| || |||||||| | | ||| ||| ||||| || || | |||||| Sbjct 306348 CGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATAAAAGTGTCAGCTAAACCTTGA 306289 Query 116263 ACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTTCGAGCGGTCTCCACGGGATAA 116322 ||||| | | ||||||| | |||||||||||| || ||| || || || || || Sbjct 306288 ACACCCAAGGCAATTGGTCTATGTCTCATATTGGATCTTCTCGCTTCTTCAACAGGGTAG 306229 Query 116323 AAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGC 116382 |||| | ||| ||||| || |||| ||| || ||||| || | ||||| || | Sbjct 306228 TAATTACGATCAATAACTCTGTTTAAATTACGAGTAACAACTTTGGCAATTTCGTGTAAT 306169 Query 116383 TTTTCGTAATCAAAACTGCGAGTCT---CTTCAT-TGACAT--------ACTTAGGAAGG 116430 |||| | | | || | ||| | | || | |||| | || || | | Sbjct 306168 TTTTTGAAGTTGTAAGTAGAAGTTTGGCCGTCCTCTGACGTTTCAATGAACGCTGGCAAG 306109 Query 116431 GCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCC 116490 || | || |||| ||||| |||| || || ||| | | | |||||| | |||||| Sbjct 306108 GCAACGGAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAATTTCA 306049 Query 116491 GTACACAAATTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACAC 116550 || || ||||| ||| || |||||||| ||||| || |||||| |||| || Sbjct 306048 CAGCATAAGTTTGATGACTTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTGTTGCAA 305989 Query 116551 GCATCCTTGTAGAGCATATATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTC 116610 ||||| || || | || | | || || ||||| || ||||| | | | ||| | | | Sbjct 305988 GCATCTTTATAAACCACAAAAGGTGTACCCGTTTCAGTTTGTGCTTCCAAAATGGAATAC 305929 Query 116611 CATACATCGGCGGCTGGCACAGTGGCGTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAG 116670 |||| | ||| | ||| || | || || || | ||||| || || Sbjct 305928 CATAATTTTTGAGCT---TTAATGGTCTTACCACGACCTTCTTTTTCGTAGCGGGTATAT 305872 Query 116671 AGGGCCTCAAACTCTTCACC--CACAGCCTCTGAGAGCCCTGGTGCCTTATCTGGACAGA 116728 || || |||||||| ||||| |||| | || ||| || || || |||| ||| Sbjct 305871 AGAGCTTCAAACTCGTCACCGTAACAGTCGCTTAGA--CCGGGAGCGGCTGTTGGAGAGA 305814 Query 116729 AGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCAGAGCG 116788 | | || ||| ||| ||| || || ||||||||||| || || || ||||| || | Sbjct 305813 ACAAAGTCCAAGTCCCATTCTCTTCGACACGCTTCATGAAAAGATCAGGAATCCACAGAG 305754 Query 116789 CCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTCCAAAA 116848 | | || | ||| | ||| |||||| | || || || | | || | || Sbjct 305753 CAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAA 305694 Query 116849 AGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCTTGCGA 116904 | || | |||||| || ||||| ||||||||||||| || | | ||| ||| | Sbjct 305693 AATCAAAGATATCAGCATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTG- 305635 Query 116905 CGACCAGCCTGGTTTACATACCTCGCCGTTGCGTTAAATACGCGAAGCATTGGAATGATA 116964 |||| |||||| ||||| | || || ||||| || |||| ||| ||||| | Sbjct 305634 TTACCACCCTGGTCGACATAACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAAC 305575 Query 116965 CCATCAGATTGGCCATTTGTCCCCCGAATACGAG-ACTTGTTGGCTCTGACATCGTGGAT 117023 || | ||| || ||||| || ||| || || ||| | | | | ||||| Sbjct 305574 CCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTT-GAACGAATGTTATGGAT 305516 Query 117024 GTGCATACCAATACCCCCTGCCCACTTTGAGATTTGTGCGCACTCCGTGAGACTGCCGTA 117083 || | ||||||||| || || || || || || || || | | | || |||| Sbjct 305515 ATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTA 305456 Query 117084 GATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGTGGCCT 117143 || || ||||| ||||| |||| | |||| | ||| || |||||||| || | Sbjct 305455 AATACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTT 305396 Query 117144 TGGTGTACCAGCGTTGAAGAGGGTTGG 117170 ||| |||||||| || || | ||||| Sbjct 305395 TGGAGTACCAGCATTAAACAAAGTTGG 305369 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613507069629720