Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq13 107 2e-18 >seq13 Length=869764 Score = 107 bits (118), Expect = 2e-18 Identities = 324/492 (66%), Gaps = 20/492 (4%) Strand=Plus/Plus Query 154602 ATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCA 154661 || ||||| || ||| ||| || ||||||||||| |||| |||| ||||| || | Sbjct 555519 ATTACAGGTTTCGATGGTATTTCTTTACAACCTAATTCAGGTGCACAAGGTGAATACACC 555578 Query 154662 GGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGT 154721 || || || |||| | | ||| || | || || | | | || |||||| Sbjct 555579 GGTTTGAGAGTAATCAGATCTTACTTGGAAAGCAAGGGTGAAAGTTACCGTAACGTATGT 555638 Query 154722 TTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAA 154781 || || || | || || ||||| || ||||| ||| ||||| |||||| || ||||| Sbjct 555639 TTAATCCCCGTTTCCGCTCATGGCACAAATCCAGCTTCTGCTGCCATGGCGGGTTTGAAA 555698 Query 154782 GTTGTAGGTGTCAAGTGTGATGATGATGGT-------AACA--TAGACATCAAAGATCTA 154832 ||||| |||||| ||| | |||||| | | | ||| | ||||| | | Sbjct 555699 GTTGTTCCTGTCAACTGTTTACAAGATGGTTCTTTGGATCTGGTTGACTT-AAAGACCAA 555757 Query 154833 GAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATACCCATCT 154892 | |||||| || | || | | | ||| | ||| ||||| || || || ||| Sbjct 555758 GGCTGAAAAGCATTC-TAAAGAACT---AGCTGCC--GTA--ATGATCACTTATCCTTCT 555809 Query 154893 ACACATGGTGTATTTGAAACTAACATTAGACA-GATATGTAAGATCGTTCATGACAATGG 154951 || ||||| |||||||| | ||| ||| | ||| | ||||| ||| ||| Sbjct 555810 ACTTATGGTTTATTTGAACCAGGCATCCAACATGCTATCGAT-ATCGTGCATTCTTTTGG 555868 Query 154952 TGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATG 155011 ||| || |||||| | ||||| || ||| | || || ||||| || || | |||| | Sbjct 555869 TGGGCAAGTATATTTGGATGGTGCTAATATGAACGCGCAGGTTGGGTTAACTTCACCAGG 555928 Query 155012 TGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGG 155071 || |||||||||||| || || | || || || || ||||| | || || ||||| Sbjct 555929 AGATCTTGGTGCAGATGTCTGCCACTTGAATTTGCACAAGACATTTTCCATCCCTCATGG 555988 Query 155072 AGGTGGAGGTCC 155083 ||||| ||||| Sbjct 555989 TGGTGGTGGTCC 556000 Score = 93.3 bits (102), Expect = 5e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||| | |||||| | || ||||| ||||| |||||||||||||| || ||||| | Sbjct 554655 CAACGATTTGGTGTCCCAATGGGTTATGGTGGTCCTCATGCTGCCTTTTTTGCTGTCATT 554714 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 || |||| || ||||| || || ||||||||||| ||| ||| ||| | ||| Sbjct 554715 GATAAGTTAAATAGAAAAATTCCAGGCAGAATTGTCGGTGTGTCTAAAGACCGCTTAGGG 554774 Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947 || | || | | || || || || || |||||||| || || | | | || || ||| Sbjct 554775 AAAACGGCCTTGCGTTTGGCCCTCCAAACCAGAGAGCAACACATAAAGCGTGATAAGGCA 554834 Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986 || || || || || ||||| || || |||||||| Sbjct 554835 ACTTCAAATATTTGTACCGCTCAAGCTCTATTGGCTAAT 554873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212676917280