Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_015284.1 Length=183806 Score E Sequences producing significant alignments: (Bits) Value seq13 113 5e-20 >seq13 Length=869764 Score = 113 bits (124), Expect = 5e-20 Identities = 325/492 (66%), Gaps = 20/492 (4%) Strand=Plus/Plus Query 159277 ATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCA 159336 || ||||| || ||| ||| || ||||||||||| |||| |||| ||||| || | Sbjct 555519 ATTACAGGTTTCGATGGTATTTCTTTACAACCTAATTCAGGTGCACAAGGTGAATACACC 555578 Query 159337 GGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGT 159396 || || || |||| | | ||| || | || || | | | || |||||| Sbjct 555579 GGTTTGAGAGTAATCAGATCTTACTTGGAAAGCAAGGGTGAAAGTTACCGTAACGTATGT 555638 Query 159397 TTGATACCAGAGTCAGCACATGGAACTAATCCTGCATCAGCAGTGATGGCAGGGATGAAA 159456 || || || | || || ||||| || ||||| || || || | ||||| || ||||| Sbjct 555639 TTAATCCCCGTTTCCGCTCATGGCACAAATCCAGCTTCTGCTGCCATGGCGGGTTTGAAA 555698 Query 159457 GTTGTAGGTGTCAAGTGTGATGATGATGGC-------AACA--TAGACATCAAAGATCTA 159507 ||||| |||||| ||| | ||||| | | | ||| | ||||| | | Sbjct 555699 GTTGTTCCTGTCAACTGTTTACAAGATGGTTCTTTGGATCTGGTTGACTT-AAAGACCAA 555757 Query 159508 GAGAAGAAAGCAATCATGAATACATTTGAACTGTCATGTATTATGATTACATATCCATCT 159567 | |||||| || | || | | | ||| | ||| ||||| || ||||| ||| Sbjct 555758 GGCTGAAAAGCATTC-TAAAGAACT---AGCTGCC--GTA--ATGATCACTTATCCTTCT 555809 Query 159568 ACACATGGTGTATTTGAAACAAACATCAGACA-GATATGTAAGATTGTTCATGAGAATGG 159626 || ||||| |||||||| || |||| ||| | ||| | || || ||| ||| Sbjct 555810 ACTTATGGTTTATTTGAACCAGGCATCCAACATGCTATCGAT-ATCGTGCATTCTTTTGG 555868 Query 159627 TGGTCAGGTATATCTTGATGGTGCAAATCTAAATGCACAGGTAGGTCTAGCAAAACCATG 159686 ||| || |||||| | |||||||| ||| | || || ||||| || || | |||| | Sbjct 555869 TGGGCAAGTATATTTGGATGGTGCTAATATGAACGCGCAGGTTGGGTTAACTTCACCAGG 555928 Query 159687 TGACTATGGTGCAGATGTATGTCATCTAAACTTACATAAGACATTCTGTATTCCACATGG 159746 || |||||||||||| || || | || || || |||||||| | || || ||||| Sbjct 555929 AGATCTTGGTGCAGATGTCTGCCACTTGAATTTGCACAAGACATTTTCCATCCCTCATGG 555988 Query 159747 AGGTGGAGGTCC 159758 ||||| ||||| Sbjct 555989 TGGTGGTGGTCC 556000 Score = 89.7 bits (98), Expect = 6e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 158443 CAAAGGTTTGGTATTCCTATGGGATACGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 158502 ||| | |||||| | || ||||| || || |||||||||||||| || ||||| | Sbjct 554655 CAACGATTTGGTGTCCCAATGGGTTATGGTGGTCCTCATGCTGCCTTTTTTGCTGTCATT 554714 Query 158503 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGCGAAGGT 158562 || |||| || ||||| || || ||||||||||| ||| ||| ||| || ||| Sbjct 554715 GATAAGTTAAATAGAAAAATTCCAGGCAGAATTGTCGGTGTGTCTAAAGACCGCTTAGGG 554774 Query 158563 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGAAGAGACAAAGCA 158622 || | || | | || || || || || |||||||| || || | | || || ||| Sbjct 554775 AAAACGGCCTTGCGTTTGGCCCTCCAAACCAGAGAGCAACACATAAAGCGTGATAAGGCA 554834 Query 158623 ACCAGTAACATCTGCACAGCACAAGCACTGCTGGCTAAT 158661 || || || || || || ||||| || |||||||| Sbjct 554835 ACTTCAAATATTTGTACCGCTCAAGCTCTATTGGCTAAT 554873 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588051075039120