Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10 219 5e-52 seq15 199 4e-46 seq5 179 4e-40 >seq10 Length=751133 Score = 219 bits (242), Expect = 5e-52 Identities = 600/912 (66%), Gaps = 9/912 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||||||||| || || || || | || || || | Sbjct 380789 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCCAAAGAGATGTTT 380730 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| || || || |||| || || || ||| ||| || || | | | Sbjct 380729 TCCATAAAGTCGAAGGGGTTTTCGACCTTGTAGTATTTCTTGTTACCGAAGGCAACCAAA 380670 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || ||| |||||| | ||| ||||| |||| || Sbjct 380669 AGTCTGTCAGCAACGAACTCAACGTATTGGTTCATTAGGTCAGCGTTCATACCTAGCAAG 380610 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAAT-TCTT-GTTCTATATTTACTGCCTCTGATATAA 18907 ||| |||| || || ||||| | |||| |||| || | || ||||| | | || Sbjct 380609 GCAACTGGTAAGGCGTCC--AAGAAGTATCTTTGTTCAATTTCCACAGCCTCGGTGACAA 380552 Query 18908 TAGATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAA 18967 | | |||| | || | || || | ||| |||| || ||||||| Sbjct 380551 TTTTTTCAACAATTGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAATAAGCATGCAA 380492 Query 18968 AATCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCA 19027 | || || | || |||||||| | |||||||| ||||| || || ||||| |||| Sbjct 380491 AGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCTGGCA 380432 Query 19028 TCAGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTT 19087 ||| ||||| || || |||||||| || || || || || || || ||||| | ||||| Sbjct 380431 TCATACCTCTCTTCTTCAACCAGAAAATGGAGGCGAAGGAACCGGAGAAGAAGACACCTT 380372 Query 19088 CTACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCAT 19146 | | | ||||| || ||||||||||| ||| ||| | || ||| | ||||||||| Sbjct 380371 CGATAGAAGCAAAGGCGACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCAT 380313 Query 19147 TTCAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGA 19206 | || ||||| || ||||||| | ||| || || | || | ||| || | Sbjct 380312 CTTAGAGCCCACTCGGCCTTCTCACCGATTTCTGGGATAGTGTGAATGGCATTGAACAAG 380253 Query 19207 TACATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAA 19266 | || || | | || || | || | ||| |||||||| ||| |||| ||| Sbjct 380252 AATTCACTTTCCTTAGGGTCCTTGATGTAGGTATCGATCAATAAGGAGTAAGTTTCAGAA 380193 Query 19267 TGAATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACT 19326 ||||||||||| || || || || || || |||| |||| |||| || || ||| Sbjct 380192 TGAATATTTTCAATCATGATTTGGAAACCATAGAAACTCTTTGCCTCTGGAATTTGAACT 380133 Query 19327 TCACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAAT 19386 || | | || |||| ||||| ||||||||||| || || ||| ||| || ||||| Sbjct 380132 TCGGTGGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAG 380073 Query 19387 GCTAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTA 19443 || | || ||||||| | | || | | | | | | | ||||| |||| | Sbjct 380072 GCAAGAACTCTAGAAATAAAAAATCTCTCGTTTTCGTTCATTCTGTTGTTCCAGTCATGA 380013 Query 19444 ATATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATAC 19503 ||||| ||||| ||||| | ||||||| | ||||| ||||| || || || ||||| Sbjct 380012 ATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAGGCTTCGGCACGCTTATAA 379953 Query 19504 ATGTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTA 19563 | ||| || ||| | || | ||||| || | |||| ||| | || | || || Sbjct 379952 GCTTGCCAAATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTTTCCTTGTCCTCATTC 379893 Query 19564 AGAATAGGTTCC 19575 | | ||||||| Sbjct 379892 AACAAAGGTTCC 379881 >seq15 Length=1201643 Score = 199 bits (220), Expect = 4e-46 Identities = 529/809 (65%), Gaps = 3/809 (0%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || ||||| ||||||||||| || || |||| ||| | ||| | | ||| Sbjct 235447 AGGGCAATAGAGGCTAGATTACAAACGGCGGTTTCATCTGGGGAGGAATACTCGACGATT 235506 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| ||| | ||| |||| || |||||||| || || || || | | ||| Sbjct 235507 TCACAACACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTATTA 235566 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 |||| ||||||||||| ||| |||||||| || |||||| | || | || | || | Sbjct 235567 CATGAGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAAATTGCA 235626 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | | ||||| || | | || | | || |||||| ||| Sbjct 235627 TACCATAACTTTTGGGCCTTAATG---GTTTTACCACGACCTTCCCTTTCGTAACGGGTA 235683 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||| || ||||||||||| || | |||| |||||| || || || | ||| | Sbjct 235684 TATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAA 235743 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | || | ||| | |||| | || || | ||||||| | || || ||||| ||| Sbjct 235744 AATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGA 235803 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || || |||||||| | | | |||||| || ||| | || ||| || | | Sbjct 235804 GCAGGGAACAAATCCCTTGCACGGATTTCTTCTTTACCATGGGTTTTTCTAATATCGACA 235863 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 ||||| | ||||| |||||||||||||| || | | || | | || |||| || Sbjct 235864 AAGTCGAAGATATCTGCATGCCATGGTTCCAAGAAAAGGGCAAAGGCGCCAGGTCTCTTG 235923 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 ||||||||||| || | ||| | ||||||||||| |||| | | ||| || | | Sbjct 235924 TTACCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGGATCATAGGAATCAAC 235983 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 |||||||| |||| ||||| || | |||||| || | | | || || |||| Sbjct 235984 CCATTTGAAGTACCGTTGGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 236043 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 || ||| | ||||||||| | || || || | |||||| ||| | ||||||||| Sbjct 236044 TGAAGACCAACACCACCTGCAGTCTTGGAAATCATAGCACATTCTTTCAAAGTATCATAA 236103 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| ||| ||||| |||| | ||| ||||| ||||||||| ||||| Sbjct 236104 ATACCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGATGT 236163 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 ||| || | || ||||| ||||| || || ||| | || || | || | ||| Sbjct 236164 GGAGTACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAACGACATCAAA 236223 Query 48657 TTATATGTTTCAATAACAGAATCTATATC 48685 || || || | | ||||| || ||||| Sbjct 236224 TTGTAGGTCTTCAGCACAGACTCAATATC 236252 >seq5 Length=577572 Score = 179 bits (198), Expect = 4e-40 Identities = 570/874 (65%), Gaps = 31/874 (4%) Strand=Plus/Minus Query 48211 TCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAGTTCTTAGTTCTTCAT 48270 |||| || | ||| || ||||| ||||| ||| ||||| || | | | |||||| | Sbjct 305780 TCATGAAAAGATCAGGAATCCACAGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTT 305721 Query 48271 TGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCATGCCATGGTTCTAAAT 48330 | || ||| || | | |||| ||| || | |||||||||||||||||||| | | Sbjct 305720 TACCGTGGTTCTTTCTGATATCAATAAAATCAAAGATATCAGCATGCCATGGTTCCAGGT 305661 Query 48331 ATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATATATCTGGCAGTATTGT 48390 | | || | |||| |||| ||| ||||| || || || | ||| | ||| ||||| | Sbjct 305660 ACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCCTGGTCGACATAACGGGCGGTATTAT 305601 Query 48391 TATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGGTTCCCGAAATATAAC 48450 || |||| | | ||| || | | || || || |||| || || || | ||| ||| Sbjct 305600 TAAAAACACGAATCATGGGAATTAACCCGTTAGAAGTACCGTTTGTACCAGCAATGTAAG 305541 Query 48451 TTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTGCCATTTTAGATATTA 48510 ||| | | | || ||| || | ||| |||||||| || |||| || || | Sbjct 305540 AACCAGTTGAACGAATGTTATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCA 305481 Query 48511 GAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCATCTATCATATTTAATA 48570 |||||| ||| | || || ||||| || || ||| || || |||| | | Sbjct 305480 AAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCA 305421 Query 48571 GAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATAATGTTGGAGATGCAT 48630 |||||| |||||||| || | ||| || | |||||| || |||||||| |||| Sbjct 305420 AGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACAAAGTTGGAGAGGCAT 305361 Query 48631 GAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAGAATCTATATCCCATT 48690 || |||| |||| || | || ||||||||||| | | ||| || || || | Sbjct 305360 GAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCAGCTTCGATGTCTCTAC 305301 Query 48691 GATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTTCAACAATTTTGTTAT 48750 || || || | | || | ||| | | | ||| || | ||| | | || | | Sbjct 305300 CGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTTCGGCCACTTGGCCGT 305241 Query 48751 TTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAATAGTTGTA-TGAAAAG 48809 | ||| | | | ||| || |||||| ||||| ||||||||||| |||| || ||| Sbjct 305240 TGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTGAAACCAAAATAACTGTACTGGAAA- 305182 Query 48810 TCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-TAT----ATACT---- 48860 || | |||| | ||||| || |||| | | ||||| | || || ||||| Sbjct 305181 TCTCTGTCATAGACAATTGCAGAGTTTAATTTATCCTTGTTTTCCATGACAATACTGTAG 305122 Query 48861 ACATC--CATTA--CAT----------TTTTTGATATAA---TTGA-TTCCTTGTAAAGA 48902 ||||| || | ||| || || | |||| | | |||||| Sbjct 305121 ACATCGTCAGAAATCATGGGAGCGGGCTTACCAGTAGCAGCGTTGACATATCTATAAAGA 305062 Query 48903 TCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGATTAGATATAGATATT 48962 ||||| ||||| | | |||| |||| | |||| |||||| | |||||| || | ||| Sbjct 305061 TCTTCGACAACTTTAGAAAATTGTTTTGTAGTTTGTTTATGTAAATTAGAAATGGCAATT 305002 Query 48963 CTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTAC-TAGATATTTCTGC 49021 || ||||| || |||| ||||||||||||| || || ||||||| | || | ||||| Sbjct 305001 CTGGCAGCCAAGGTAGCGTAATCTGGATGAACAGTGGT-CATGTACGCACATGTCTCTGC 304943 Query 49022 TGCTAATATATCTAATTCTTTAGTAGTTACACCT 49055 ||||| | |||| |||| | || || |||||| Sbjct 304942 GGCTAAGTTGTCTAGTTCTATTGTTGTGACACCT 304909 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108680551880