Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq14 197 3e-45 seq15 194 3e-44 seq11 167 5e-36 seq12 159 7e-34 >seq14 Length=872155 Score = 197 bits (218), Expect = 3e-45 Identities = 183/232 (79%), Gaps = 0/232 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | ||| ||||| |||| |||||||||||||| || |||||||||| Sbjct 57340 TACCACCTCTCAATCTCAGCACTAAATGCAAGGTAGATTCTTTCTGAATGTTATAATCAG 57399 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||| ||||| ||||| || || ||||| || | || ||||| ||||||| Sbjct 57400 ACAGTGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCTGGAG 57459 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || ||||| |||| || || || ||||| |||||| || ||| | Sbjct 57460 GAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGA 57519 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTAT 82813 ||||||| ||||| || || || ||||| ||||| ||||| || ||||| || Sbjct 57520 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCATAAT 57571 Score = 188 bits (208), Expect = 1e-42 Identities = 179/229 (78%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || || ||||| |||||||| || || || ||||| ||||| | Sbjct 57112 TACCACCTCTCAATCTCAAGACCAAGTGAAGAGTAGACTCCTTTTGAATATTGTAATCGG 57171 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| |||| || ||||| |||||||| || ||||| || | ||| ||||| ||||||| Sbjct 57172 ATAACGTTCTGCCATCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAG 57231 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||||||||||||||| |||| || || || || ||||| || || ||| | Sbjct 57232 GAATACCTTCCTTATCTTGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCGA 57291 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | |||| ||| || ||||| || |||| |||||| ||||| |||||||| Sbjct 57292 CCTCCAGAGTAATAGTCTTACCAGTCAGCGTCTTGACAAAGATCTGCAT 57340 Score = 174 bits (192), Expect = 3e-38 Identities = 176/229 (77%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | ||| ||||| |||| ||||||||||||||| || |||||||||| Sbjct 56884 TACCACCTCTCAATCTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCAG 56943 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || ||||||| ||||| ||||| || || ||||| || | ||| ||||| ||||||| Sbjct 56944 ACAGCGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAG 57003 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || ||||| || || ||||| |||| || || || ||||| || || || ||| | Sbjct 57004 GAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAA 57063 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 | || | ||||| || ||||| || | || || ||||| || ||||| Sbjct 57064 CCTCTAGGGTTATAGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCAT 57112 Score = 168 bits (186), Expect = 1e-36 Identities = 180/238 (76%), Gaps = 0/238 (0%) Strand=Plus/Plus Query 82573 TTTATCACCTACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATAT 82632 || |||| |||| || ||||| | | || | ||| ||||||||||| || || || | Sbjct 56647 TTAATCAATTACCACCCCTCAACCTTAAGACCAGGTGGAGAGTAGATTCCTTTTGAATGT 56706 Query 82633 TATAATCAGATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTT 82692 | || || |||| ||||||| ||||| |||||||| || ||||| || | ||| |||| Sbjct 56707 TGTAGTCGGATAATGTTCTACCATCTTCCAGTTGTTTACCGGCAAAAATCAATCTCTGTT 56766 Query 82693 GATCTGGAGGTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCAT 82752 | |||||||| || ||||||||||||||||| |||| || || || ||||| || || Sbjct 56767 GGTCTGGAGGAATACCTTCCTTATCTTGAATTTTTGACTTGACGTTGTCAATAGTGTCGG 56826 Query 82753 TAGGTTCTACTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 || ||| || || | ||||| ||||| || |||| |||||| || || |||||||| Sbjct 56827 AAGATTCGACCTCGAGGGTTATAGTCTTACCAGTCAGCGTCTTAACGAAGATCTGCAT 56884 >seq15 Length=1201643 Score = 194 bits (214), Expect = 3e-44 Identities = 175/220 (80%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| |||||||| | || |||||||| | ||| |||||||| || || || || |||| Sbjct 71307 TACCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTGTAGTCAG 71248 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | | ||||||||||||| | ||| || ||||||||||| | ||||||||| || || | Sbjct 71247 ACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTG 71188 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||||||||||| || ||||| ||||| || ||| || ||| | Sbjct 71187 GGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAA 71128 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||||||||| || ||||| || ||||| ||||| ||||| Sbjct 71127 CTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 71088 >seq11 Length=805821 Score = 167 bits (184), Expect = 5e-36 Identities = 169/220 (77%), Gaps = 0/220 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| ||||| || | || ||| || || | ||| ||||| || || || || || |||| Sbjct 742725 TACCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAG 742784 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 ||| | ||||||||||||| | ||| || || |||||||| | ||||||||| || || | Sbjct 742785 ATAAAGTTCTACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTG 742844 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| | Sbjct 742845 GGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAA 742904 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAA 82801 |||| ||||| || ||||| || ||||| ||||| || || Sbjct 742905 CTTCTAAAGTGATGGTCTTACCAGTCAAAGTCTTAACGAA 742944 >seq12 Length=1068413 Score = 159 bits (176), Expect = 7e-34 Identities = 172/228 (75%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| |||||||| | || || ||||||| ||| |||||||| || || || || ||||| Sbjct 493813 ACCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCTTTTTGGATGTTGTAGTCAGA 493754 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 | |||| || ||||| | ||| || ||||||||||| | ||||||||| || || || Sbjct 493753 CAAGGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGG 493694 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 || |||||||| ||||| ||||| | || ||||| ||||| || ||| || ||| || Sbjct 493693 GATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 493634 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||| | || || ||||| || || || ||||| || || || ||||| Sbjct 493633 TTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 493586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981826986145763