Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq15 167 6e-36 seq5 156 1e-32 seq11 123 6e-23 seq10 102 2e-16 >seq15 Length=1201643 Score = 167 bits (184), Expect = 6e-36 Identities = 405/609 (67%), Gaps = 11/609 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| ||||| ||| | || ||| | ||||| || | | || || || | | Sbjct 236363 TATTTTGGGTTCAAGACTTTGGAGCGTTCGTATTTGCTAAGACTGAACGGTGAAGTGGCT 236304 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || || ||| || || | ||||| ||| | ||||| || || ||||||| | Sbjct 236303 GAACGGCCACAGCACTTGGTTATGCGTGTGGCGCTGGGTATCCACGGTAGTGATATTGAG 236244 Query 110424 GCTGTTATTGAATGTTATGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 |||| | | || || | || || || | | | | ||| ||| | || || Sbjct 236243 TCTGTGCTGAAGACCTACAATTTGATGTCGTTAAGATATTTC-ACTCACGCTTCCCCAAC 236185 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 | |||| ||||| || ||| ||| || |||| || || || | | || || Sbjct 236184 CTTATTCAACGCTGGTACTCCACATCCCCAAATGTCTTCATGTTTCCTAATTGCCATGAA 236125 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 ||||| ||||||||||||||||||||| || | |||||| |||| | ||||| || | Sbjct 236124 GGATGACTCTATTGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCCAAGAC 236065 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 | || || ||||| |||| || | | || || || | ||| | ||||||| Sbjct 236064 TGCAGGTGGTGTTGGTCTTCATATTAACAACATCCGTTCCACAGGTTCTTATATCGCCGG 236005 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||||| ||| | |||| ||| | | || |||||| | ||||| Sbjct 236004 TACCAACGGTACTTCAAATGGGTTGATTCCTATGATCCGTGTTTTCAACAATACTGCTCG 235945 Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| | ||||| ||| |||||| |||| | ||||| | | | ||||| || Sbjct 235944 TTATGTGGACCAAGGAGGTAACAAGAGACCTGGCGCCTTTGCCCTTTTCTTGGAACCATG 235885 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA- 110838 |||| ||||||| || || || | || || | |||| || || | ||||| ||| Sbjct 235884 GCATGCAGATATCTTCGACTTTGTCGATATTAGAAAAACCCATGG---TAAAGAAGAAAT 235828 Query 110839 --GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||| | ||||| || ||| |||||||| | || | || |||||||||||||| Sbjct 235827 CCGTGCAAGGGATTTGTTCCCTGCTCTGTGGATTCCTGACCTTTTTATGAAACGTGTTCA 235768 Query 110897 AGAAAATGG 110905 ||| |||| Sbjct 235767 AGAGGATGG 235759 >seq5 Length=577572 Score = 156 bits (172), Expect = 1e-32 Identities = 560/865 (65%), Gaps = 18/865 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||||||||||||| | |||||| |||||||||| | |||| ||| | | Sbjct 305195 TATTTTGGTTTCAAAACTTTGGAACGTTCTTATTTACTAAGAATCAACGGCCAAGTGGCC 305254 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| |||||| | || | | || || | || || || || || || || Sbjct 305255 GAACGTCCACAACACTTAATTATGAGAGTCGCACTGGGCATCCACGGTAGAGACATCGAA 305314 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||| | | ||| ||| | || | | ||| | || |||||| |||| || Sbjct 305315 GCTGCTCTAGAAACATATAACTTAATGTCTCTAAAATACTTTACTCATGCCTCTCCAACT 305374 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTT-CTAGGAATTAA 110542 | ||||| || || ||| | ||| || | ||||| |||||| | | || || Sbjct 305375 TTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCTTG-TTTCTTGGTCGCCATGAA 305433 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || || ||||| || |||||||| || || | |||||| |||| | ||||| |||| Sbjct 305434 GGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGAATGTGCTTTGATTTCCAAAAC 305493 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| | || | ||| | ||||| |||| || | | || || Sbjct 305494 TGCTGGTGGTATTGGTCTACATATCCATAACATTCGTTCAACTGGTTCTTACATTGCTGG 305553 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||| | || | |||| ||| | | || || || | || || Sbjct 305554 TACAAACGGTACTTCTAACGGGTTAATTCCCATGATTCGTGTTTTTAATAATACCGCCCG 305613 Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | || |||||| || ||| ||| | |||||| | || || ||||| || Sbjct 305614 TTATGTCGACCAGGGTGGTAACAAAAGACCTGGTGCCTTTGCTCTGTACCTGGAACCATG 305673 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA- 110838 |||| | ||||| ||||| || | || | | || || || || | ||||| ||| Sbjct 305674 GCATGCTGATATCTTTGATTTTATTGATATCAGAAAGAACCACGG---TAAAGAAGAAAT 305730 Query 110839 --GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||| | ||||| ||| ||| |||||||| | ||| | |||||||| ||||| | Sbjct 305731 TCGTGCAAGAGATTTGTTTCCTGCTCTGTGGATTCCTGATCTTTTCATGAAGCGTGTCGA 305790 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCC-TCATCGTTCTCCTGGTCTATCTGA-TGTA 110954 ||| ||||| | ||| || | | | ||| || | |||| |||||| || ||| Sbjct 305791 AGAGAATGGGACTTGGACTTTGTTCTCTCCAACAGC-CGCTCCCGGTCTAAGCGACTGT- 305848 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014 || || | |||||||||| || || || ||||||||||| | | || Sbjct 305849 TACGGTGACGAGTTTGAAGCTCTATATACCCGCTACGAAAAAGAAGG---TCGTGGTAAG 305905 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 ||| ||||||| || | |||| || | ||| ||||| |||||| || || Sbjct 305906 ACCATTAAAGCTCAAAAATTATGGTATTCCATTTTGGAAGCACAAACTGAAACGGGTACA 305965 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 |||| | | | ||||||||| | || | || ||||| |||| || || || Sbjct 305966 CCTTTTGTGGTTTATAAAGATGCTTGCAACAGAAAGTCTAACCAAAAAAACTTGGGTGTT 306025 Query 111135 ATTAAGTCTAGTAATTTGTGCTGTG 111159 || ||||| || || ||||||| Sbjct 306026 ATCAAGTCATCAAACTTATGCTGTG 306050 >seq11 Length=805821 Score = 123 bits (136), Expect = 6e-23 Identities = 155/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| ||||||||||| | ||||| ||| ||||||||||||||||||||||| Sbjct 211780 GATAATGATCCAGTTCTGTTCAACCGTCAACCCTCATTGCATAAAATGTCTATGATGGCT 211721 Query 305378 CATAAAGTCAAAGTATTATCTGGATT-GACATTTCGATTAAATGTAAGTGCTTGTACGCC 305436 || | ||| ||||| | || | ||| |||||| |||| ||| | || | | || Sbjct 211720 CACAGAGTGAAAGT-TATTCCGTATTCCACATTTAGATTGAATTTGTCTGTTACATCTCC 211662 Query 305437 TTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTAC 305496 || ||||| ||||| || || || ||||||||| | || |||||||| || ||| || Sbjct 211661 ATACAATGCCGATTTCGACGGTGACGAAATGAATCTTCACGTACCTCAGTCCGAGGAAAC 211602 Query 305497 AATGACTGAATTATCAGAAATATGTTCTGT 305526 || | | ||| | || || ||||| |||| Sbjct 211601 AAGGGCAGAACTGTCCCAATTATGTGCTGT 211572 Score = 95.1 bits (104), Expect = 3e-14 Identities = 124/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCAT 304943 ||||||| |||| |||| || | ||||||||||| |||||||| || | ||||| | Sbjct 212206 TTACAATTTCATGTTGCCACTTATATGGATAATGATATTGCTGGCCAACCA--CAGGC-T 212150 Query 304944 CT-CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 || |||| || || | || |||| |||| | || | || |||||||||||| Sbjct 212149 CTACAAAAGTCCGGTCGTCCCGTAAAATCTATTCGTGCTCGTTTGAAGGGTAAAGAGGGT 212090 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAG 305049 |||||| | |||||| ||||||| || |||||||||||| ||||| Sbjct 212089 CGTATTAGGGGTAATTTAATGGGTAAGCGTGTTGATTTTTCAGCAAG 212043 >seq10 Length=751133 Score = 102 bits (112), Expect = 2e-16 Identities = 343/528 (65%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 131489 TTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACC 131548 |||||||| | |||||| || ||| || | || |||||| |||| ||| | || || Sbjct 379975 TTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCATGACTGGAACAACAGAA-- 380032 Query 131549 TTGAATGAAAAAGA------TTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGAT 131602 |||| ||||| || |||| |||| | ||||||||| || ||||||| ||| Sbjct 380033 -TGAACGAAAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGCCGCTTCTGAC 380091 Query 131603 GGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAA-GAAATTGATATTCCTGAAGT 131661 || ||||||| |||||| | ||| || ||| | || ||| || | ||||| || | Sbjct 380092 GGTATTGTTAATGAAAACTTGGTTGAAAACTTC-TCCACCGAAGTTCAAATTCCAGAGGC 380150 Query 131662 AACATCGTTCTACACATTTCAAGCCGCTGTTGAATCTATTCATAGCGAGATGTATTCATT 131721 || ||||| || ||| | ||||| ||||||| || | || || || Sbjct 380151 AAAGAGTTTCTATGGTTTCCAAATCATGATTGAAAATATTCATTCTGAAACTTACTCCTT 380210 Query 131722 ATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTG---ATGCTGT 131778 |||||| || | || | || || | | ||| | |||| || |||| | Sbjct 380211 ATTGATCGATAC-CTACATCAAG--GACCCTAAGGAAAGTGAATTCTTGTTCAATGCCAT 380267 Query 131779 AAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGA 131838 | | | || | ||| |||| || || |||||| | | |||||||||||| | Sbjct 380268 TCACACTATCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGC 380327 Query 131839 TTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTC 131898 | ||| ||| | |||||| || || ||||||| | | |||||| | ||||| || Sbjct 380328 TGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCTTCTATCGAAGGTGTCTTCTTCTC 380387 Query 131899 AGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATT 131958 ||| | ||| | || || ||| | |||||| | || ||||||| || | | || Sbjct 380388 CGGTTCCTTCGCCTCCATTTTCTGGTTGAAGAAGAGAGGTATGATGCCAGGTTTGACCTT 380447 Query 131959 GTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 || || |||| || | ||||| |||| ||||| || || ||||| Sbjct 380448 CTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACTTTGC 380495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812541497337