Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq5 235 6e-57 seq15 145 9e-30 seq16 91.5 2e-13 >seq5 Length=577572 Score = 235 bits (260), Expect = 6e-57 Identities = 829/1278 (65%), Gaps = 44/1278 (3%) Strand=Plus/Plus Query 104330 CCAACCCTCTTCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCC 104389 ||||| | || ||||||||||| |||| ||| ||||||||| ||| ||| | ||||| Sbjct 305369 CCAACTTTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCTTGTTTCTTGGTCGCC 305428 Query 104390 AACAAGGAGGACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCA 104449 | ||||||||||| ||| | ||||| || | ||| | | || ||||| || || Sbjct 305429 ATGAAGGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGAATGTGCTTTGATTTCC 305488 Query 104450 AAGTGGGCTGGGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATT 104509 || ||||| |||||||| | || |||||| | | | | | | ||| ||| Sbjct 305489 AAAACTGCTGGTGGTATTGGTCTACATATCCATAACATTCGTTCAACTGGTTCTTACATT 305548 Query 104510 CGGGGGACAAATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACA 104569 || ||||| ||| || | || | ||||| ||| |||| || ||||| || Sbjct 305549 GCTGGTACAAACGGTACTTCTAACGGGTTAATTCCCATGATTCGTGTTTTTAATAATACC 305608 Query 104570 GCGCGCTATGTAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGA 104625 || || ||||| | || | | || | |||| || | | || | || || || Sbjct 305609 GCCCGTTATGTCGACCAGGGT-GGTAACAAAAGACCTGGTGCCTTTGCTCTGTACCTGGA 305667 Query 104626 GCCATGGCACGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGA 104685 |||||||| || |||||| | || || |||| | | ||||| ||| | || || Sbjct 305668 ACCATGGCATGCTGATATCTTTGATTTTATTGATATCAGAAAGAACCACGGTAAAGAAGA 305727 Query 104686 GGCGCGGTGC-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAG 104744 | |||| | ||| | || | ||||| |||||||| ||||| ||||||||| | | Sbjct 305728 AATTC-GTGCAAGAGATTTGTTTCCTGCTCTGTGGATTCCTGATCTTTTCATGAAGCGTG 305786 Query 104745 TTGAGGAGAGTGGCAATTGGTCTCTCTTTTGTCCAGACA-AGGCACCTGGTCTCTCCGAT 104803 | || |||| ||| | |||| || | || | |||| ||| || || ||||| ||| Sbjct 305787 TCGAAGAGAATGGGACTTGGACTTTGTTCTCTCCA-ACAGCCGCTCCCGGTCTAAGCGA- 305844 Query 104804 GCCGT--GGGTGAGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGA 104861 | || ||||| ||||||||||| || || || ||||| |||||||||| | Sbjct 305845 -CTGTTACGGTGACGAGTTTGAAGCTCTATATACCCGCTACGAAAAAGAAGGTCGTG--- 305900 Query 104862 CTGCGACGGTGCCAGCTGCCGATGTGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTG 104921 | ||| | |||| | | ||| | | ||| | | | ||||| || || | Sbjct 305901 GTAAGACCATTAAAGCTCAAAAATTATGGTATTCCATTTTGGAAGCACAAACTGAAACGG 305960 Query 104922 GTACACCATACATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGG 104981 ||||||| | || |||| ||||| || || ||| |||| ||| ||||| || |||| Sbjct 305961 GTACACCTTTTGTGGTTTATAAAGATGCTTGCAACAGAAAGTCTAACCAAAAAAACTTGG 306020 Query 104982 GTGTGATCAAGAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGA 105041 |||| |||||| || || | || ||||| | || | ||| || || | Sbjct 306021 GTGTTATCAAGTCATCAAACTTATGCTGTGAAATTGTTGAGTACTCAGCTCCGGACGAAA 306080 Query 105042 CGGCTGTGTGTAACCTCGCATCAATCGCTCTCCCCAAGT--ATGTGGATC--CAGA---- 105093 | ||||| |||||| | || || | || | || || || || | | |||| Sbjct 306081 CTGCTGTTTGTAACTTGGCTTCCGTTGCCTTGCCAGCGTTCAT-TGAAACGTCAGAGGAC 306139 Query 105094 -GACAAA----GACATTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAA 105148 | |||| || | | | ||||| | |||||| || | ||| ||| || Sbjct 306140 GGCCAAACTTCTACTTACAACTTCAAAAAATTACACGAAATTGCCAAAGTTGTTACTCGT 306199 Query 105149 AACCTAAACAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAAT 105208 || ||||||||||||||||| | |||| ||||| ||||| || | | ||| ||| Sbjct 306200 AATTTAAACAGAGTTATTGATCGTAATTACTACCCTGTTGAAGAAGCGAGAAGATCCAAT 306259 Query 105209 ATGAGACACCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCA-TTCTTTG 105267 |||||||| | ||||||| | |||||||| ||| | || || || || | || Sbjct 306260 ATGAGACATAGACCAATTGCCTTGGGTGTTCAAGGTTTAGCTGA------CACTTTTATG 306313 Query 105268 TCGCCACG-----CATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAG 105322 | || ||| | |||||||| || || || | | ||| | |||||||| Sbjct 306314 TTGCTACGTTTACCCTTTGATTCTGAAGAGGCCCGTTTACTAAATATCCAAATATTTGAA 306373 Query 105323 ACCATGTATCACGCCGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATAT 105382 || || ||||| ||| | | || || || || | || | || || ||||| Sbjct 306374 ACAATTTATCATGCCTCCATGGAAGCTTCTTGTGAACTAGCTCAAAAGGACGGCCCATAC 306433 Query 105383 GAAACCTTTGAGGGTTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGT 105442 |||||||| | |||||||||||||| ||||| | ||||| || |||||||||| | Sbjct 306434 GAAACCTTCCAAGGTTCTCCAGCTTCTCAAGGTATACTTCAGTTCGATATGTGGG-ATCA 306492 Query 105443 GAGACCAAGCTTCA-CTACGACTGGGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCT 105501 | ||| | || | || ||||| || | | | || |||| | | | ||| | Sbjct 306493 AAAACCCTACGGCATGTGGGATTGGGACACTTTGAGGAAAGATATCATGAAACATGGTAT 306552 Query 105502 TCGTAACAGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAA 105561 | | ||| | | |||||| |||||||| || || ||||| | ||||| |||||| | Sbjct 306553 TAGAAACTCTTTGACCATGGCACCAATGCCTACCGCATCCACATCCCAAATATTGGGTTA 306612 Query 105562 TAATGAATGCTTTGAACC 105579 ||||||||| |||||||| Sbjct 306613 TAATGAATGTTTTGAACC 306630 >seq15 Length=1201643 Score = 145 bits (160), Expect = 9e-30 Identities = 882/1392 (63%), Gaps = 56/1392 (4%) Strand=Plus/Minus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 |||||| || || | ||||| ||||| | ||||| || || || ||||| ||||| Sbjct 236297 CCACAGCACTTGGTTATGCGTGTGGCGCTGGGTATCCACGGTAGTGATATTGAGTCTGTG 236238 Query 104282 TTGGAGACATACGACAAGATGTCCC-AAGGTATGTTCATTCACGCAACACCAACCCTCTT 104340 || |||| ||| | |||||| ||| ||| |||| |||||| | |||||| | || Sbjct 236237 CTGAAGACCTACAATTTGATGTCGTTAAGATAT-TTCACTCACGCTTCCCCAACCTTATT 236179 Query 104341 CAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGGA 104400 ||| |||||||| ||| ||||||||||| || ||||| || |||| ||||| || Sbjct 236178 CAACGCTGGTACTCCACATCCCCAAATGTCTTCATGTTTCCTAATTGCCATGAAGGATGA 236119 Query 104401 CTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTGG 104460 ||| || | ||||| |||| ||| | | || ||||| || || ||| || || Sbjct 236118 CTCTATTGAAGGTATTTATGATACTTTGAAAGAATGTGCTATGATTTCCAAGACTGCAGG 236059 Query 104461 GGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAAA 104520 ||| |||| | || || | | | | ||| ||| ||| || || || Sbjct 236058 TGGTGTTGGTCTTCATATTAACAACATCCGTTCCACAGGTTCTTATATCGCCGGTACCAA 235999 Query 104521 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 104580 ||| ||| |||| | ||||| ||| | || || || ||| || || || ||||| Sbjct 235998 CGGTACTTCAAATGGGTTGATTCCTATGATCCGTGTTTTCAACAATACTGCTCGTTATGT 235939 Query 104581 AAATCAAGCTGGGCGTCGAAAGGGATCTATCGCAGT-----CTATCTT-GAGCCATGGCA 104634 | ||| || || ||| || || ||| | | |||| || |||||||| Sbjct 235938 GGACCAA---GGAGGTAACAAGAGACCTGGCGCCTTTGCCCTTTTCTTGGAACCATGGCA 235882 Query 104635 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGGCGCGGTG 104694 || |||||| | || || | || | | | ||| ||| | || || | ||| Sbjct 235881 TGCAGATATCTTCGACTTTGTCGATATTAGAAAAACCCATGGTAAAGAAGA-AATCCGTG 235823 Query 104695 C-CGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 | | ||| | ||| | ||||| |||||||| || || || ||||| | ||| | ||| Sbjct 235822 CAAGGGATTTGTTCCCTGCTCTGTGGATTCCTGACCTTTTTATGAAACGTGTTCAAGAGG 235763 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 ||| ||| || | |||| ||| || || ||| | |||| | ||||| Sbjct 235762 ATGGGCCCTGGACTTTATTTTCTCCCAGTGCTGCCCCAGGTTTAGATGATGTCTGGGGTG 235703 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGCGACGGTGC 104873 | || ||||||| || || || ||||| |||||||| | | || | Sbjct 235702 ATGAATTTGAAGAGCTATATACCCGTTACGAAAGGGAAGGTCGTG---GTAAAACCATTA 235646 Query 104874 CAGCTGCCGATGTGTGGAAAGCTATTCT-CAAGTCTCAAACCGAGACTGGTACACCATAC 104932 || | | ||| | || ||| | |||| | ||||| || || |||||||| | | Sbjct 235645 AGGCCCAAAAGTTATGGTATGCAATTTTACAAG-CACAAACAGAAACAGGTACACCTTTC 235587 Query 104933 ATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAAG 104992 ||| ||||||| ||| | ||||| ||||| || ||| |||| |||||| || || Sbjct 235586 ATGGTTTACAAGGACTCATGTAATAGAAAGACAAACCAACAGAACTTGGGTACCATTAAA 235527 Query 104993 AGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTGT 105052 |||||| | ||| |||||| | || | | | | |||||| || || || ||| Sbjct 235526 TCATCCAATTTGTGTTGTGAAATCGTCGAGTATTCCTCCCCAGATGAAACCGCCGTTTGT 235467 Query 105053 AACCTCGCATCAATCGCTCTCCCCAAGTATGTGGATCCAGA-GAC-AAAGA--------- 105101 || || || || || || ||||| || || || || ||| | | |||| Sbjct 235466 AATCTAGCCTCTATTGCCCTCCC--AGCATTTG--TCGAGATGTCTGAAGATGGTAAAAC 235411 Query 105102 --CA---TTTGATTATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAA 105156 || | | ||| || | | || ||| || | ||| | ||| | ||| | || Sbjct 235410 TGCAAGTTATAATTTCGAGAGTTTACATGAAATTGCTAAAGTAATTACCCATAACTTGAA 235351 Query 105157 CAGAGTTATTGATAGAAATTTTTACCCCGTTGAGACTGCTCGTAAATCTAATATGAGACA 105216 |||||| || ||| | |||| ||| || ||| || | || || ||||||| || Sbjct 235350 CAGAGTCATCGATCGTAATTATTATCCAGTTCCTGAAGCCAGAAATTCAAATATGAAGCA 235291 Query 105217 CCGTCCAATTGGTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGC 105276 | || |||| | |||||||| ||||| || ||| | || | | || | | Sbjct 235290 TAGACCTATTGCCTTGGGTGTTCAAGGTCTGGCCGATACCTATATGATGTTGCGTCTACC 235231 Query 105277 ATTTGATTCCGACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGC 105336 ||||| || || ||||| | | || | || || || ||||| ||||| || Sbjct 235230 CTTTGAATCGGAAGAAGCTCAAACTTTGAACAAACAGATTTTCGAAACCATCTATCATGC 235171 Query 105337 CGCTCTTGAGGCGAGTTCAGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGG 105396 ||||||| || | || |||||| || || ||| ||| || || || || Sbjct 235170 TACTCTTGAAGCCTCCTGTGAATTGGCACAGAAGGAAGGTAAGTATTCCACTTTCGAAGG 235111 Query 105397 TTCTCCAGCTTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCA 105456 ||||||||| || | || | || |||||||| |||||| | | | || ||| || Sbjct 235110 TTCTCCAGCCTCTAAGGGTATTCTACAATTTGACATGTGGAACGCTAAG-CCA---TTTG 235055 Query 105457 CTA----CGACTGGGAAGCTCTCAAGGAACG-CA---TCAAGGAGAAGGGTCTTCGTAAC 105508 || || |||||| ||| ||| || | || |||| | | || | | | ||| Sbjct 235054 GTATGTGGGATTGGGAA-ATCTTAAGAAAGGACATAGTCAA--ACATGGAT-TAAGAAAC 234999 Query 105509 AGTCTCCTCATGGCTCCAATGCCAACAGCCTCCACCGCACAAA-TCTTGGGTAATAATGA 105567 | | ||||| ||||||||||| ||||| || | |||| |||||||| |||| || Sbjct 234998 TCTTTAACAATGGCGCCAATGCCAACTGCCTCGACTTCTCAAATTCTTGGGT-ATAACGA 234940 Query 105568 ATGCTTTGAACC 105579 ||| |||||||| Sbjct 234939 ATGTTTTGAACC 234928 >seq16 Length=1029411 Score = 91.5 bits (100), Expect = 2e-13 Identities = 116/160 (73%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 154116 TTGCGCCACGATCTGGTCTCGCTGTGAAACATGGTATCCAAGTTGGTGCGGGTGTTGTTG 154175 |||||||| |||| || || || |||||| | ||||| ||| ||||| |||||||||| Sbjct 943712 TTGCGCCAAGATCAGGCCTAGCAGTGAAAAACGGTATTCAAACCGGTGCTGGTGTTGTTG 943771 Query 154176 ATCCCGACTACACGGGTGAAGTCAAAGTCGTTCTTTTCAATCACGGAGACAAAGACTTTG 154235 | || ||||| |||||||| ||||| || | ||||||||| | | | ||| || | Sbjct 943772 ACAGAGATTACACTGGTGAAGTTAAAGTAGTCTTATTCAATCACTCACAGAGAGATTTCG 943831 Query 154236 AGGTAAAGAGGGGTGAGCGCATCGCACAACTTGTTCTTGA 154275 | |||| ||||| ||| | || ||| | |||| || Sbjct 943832 CCATCAAGAAAGGTGATCGCGTAGCCCAATTAATTCTCGA 943871 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260676057080