Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq14 167 2e-36 seq15 138 1e-27 seq11 132 4e-26 seq12 125 6e-24 >seq14 Length=872155 Score = 167 bits (184), Expect = 2e-36 Identities = 177/231 (77%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| |||||||||| || || ||| | ||| Sbjct 57340 ATGCAGATCTTTGTCAAGACGCTGACTGGTAAGACTATTACTCTGGAGGTCGAATCTTCC 57281 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| |||||||||||| || ||||| || || || || ||| Sbjct 57280 GACACGATCGACAACGTCAAGTCAAAAATTCAAGATAAGGAAGGTATTCCTCCAGACCAA 57221 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTT-TCCGATTACAA 27166 ||| | || || | ||||| |||||| ||||||| | || |||| ||||||||||| Sbjct 57220 CAGAGATTGATTTTTGCCGGTAAACAACTGGAAGATGGCA-GAACGTTATCCGATTACAA 57162 Query 27167 CATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || ||||| ||| | ||| | ||||| || Sbjct 57161 TATTCAAAAGGAGTCTACTCTTCACTTGGTCTTGAGATTGAGAGGTGGTAT 57111 Score = 143 bits (158), Expect = 2e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| || || || || ||||| || ||| |||| || || || || ||| | ||| Sbjct 56884 ATGCAGATCTTCGTTAAGACGCTGACTGGTAAGACTATAACCCTCGAGGTCGAATCTTCC 56825 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| |||||||||||| || ||||| || || || || ||| Sbjct 56824 GACACTATTGACAACGTCAAGTCAAAAATTCAAGATAAGGAAGGTATTCCTCCAGACCAA 56765 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| |||||| ||||||| || || | ||||| |||||| Sbjct 56764 CAGAGATTGATTTTTGCCGGTAAACAACTGGAAGATGGTAGAACATTATCCGACTACAAC 56705 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| || || | || |||| || | ||| ||||||| Sbjct 56704 ATTCAAAAGGAATCTACTCTCCACCTGGTCTTAAGGTTGAGGGGTGG 56658 Score = 140 bits (154), Expect = 3e-28 Identities = 169/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || ||||| |||| || || || || ||| | ||| Sbjct 57112 ATGCAAATTTTTGTCAAAACTCTAACTGGCAAAACTATAACCCTAGAGGTTGAATCTTCC 57053 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| ||||||||| ||||||||||| || || || || ||| Sbjct 57052 GACACTATTGACAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAA 56993 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || ||| ||||||| || || | || ||||| ||| Sbjct 56992 CAGAGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACGCTGTCTGATTATAAC 56933 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || || ||||| || || | ||| | ||||| || Sbjct 56932 ATTCAGAAAGAATCTACTTTGCATTTAGTGCTGAGATTGAGAGGTGGTAT 56883 Score = 127 bits (140), Expect = 2e-24 Identities = 166/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| ||||||| || | || || | ||||| ||| | || Sbjct 57568 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 57509 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||||||||| ||||||||||| || || || || ||| Sbjct 57508 GATACCATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCAGACCAA 57449 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || ||| ||||||| || || | || ||||| ||| Sbjct 57448 CAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACACTGTCTGATTATAAC 57389 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || ||||| ||||| || || | ||| | ||||| || Sbjct 57388 ATTCAGAAAGAATCTACCTTGCATTTAGTGCTGAGATTGAGAGGTGGTAT 57339 >seq15 Length=1201643 Score = 138 bits (152), Expect = 1e-27 Identities = 163/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 ||||| || ||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 71088 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 71147 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| ||| ||||||||||| ||||| || ||||| || ||||| | || Sbjct 71148 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 71207 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || ||| | || || |||||||||||||| Sbjct 71208 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAAA 71267 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || || ||| | ||| | ||||| || Sbjct 71268 GAATCCACTTTACACTTAGTCTTGAGATTGAGAGGTGGTAT 71308 >seq11 Length=805821 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || ||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 742944 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCTGACACCATT 742885 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || |||||||| ||||| || ||||| || ||||| | || Sbjct 742884 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 742825 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||||| || |||||||||||| || || | || || |||||||| |||||| Sbjct 742824 ATCTTTGCCGGTAAGCAATTGGAAGACGGTAGAACTTTATCTGACTACAACATCCAAAAG 742765 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||||||||| | || | ||||| || Sbjct 742764 GAATCCACTTTACATTTGGTTTTGAGATTAAGAGGTGGTAT 742724 >seq12 Length=1068413 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| | ||||| ||| ||||||| || ||||| ||| | || Sbjct 493586 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCTTCT 493645 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| ||||| || ||||| || ||| Sbjct 493646 GACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAA 493705 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || || ||||||||||| | ||| | || || |||||| Sbjct 493706 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACCTTGTCTGACTACAAC 493765 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || ||||| || || || || || ||||| ||| | ||| | ||||| Sbjct 493766 ATCCAAAAAGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 493812 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918307579840