Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079145.1_202017-03- 21] 17 sequences; 12,214,669 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq14 147 5e-30 seq12 107 4e-18 seq11 105 2e-17 >seq14 Length=872155 Score = 147 bits (162), Expect = 5e-30 Identities = 158/208 (76%), Gaps = 1/208 (0%) Strand=Plus/Plus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| |||||||||||||| ||||| || |||||||||| ||| ||||| |||||||| | Sbjct 57134 CAAG-TGAAGAGTAGACTCCTTTTGAATATTGTAATCGGATAACGTTCTGCCATCTTCCA 57192 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 | ||| ||||| || || | ||||| ||||| | | || |||||||| ||||||| Sbjct 57193 GTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTGAA 57252 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 ||||| ||||| | || | |||| ||| || || || ||||||||||| || | Sbjct 57253 TTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCCAGAGTAATAGTCTTAC 57312 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCAT 152104 | || || ||||| || |||| |||||| Sbjct 57313 CAGTCAGCGTCTTGACAAAGATCTGCAT 57340 Score = 136 bits (150), Expect = 9e-27 Identities = 156/210 (74%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 151895 GACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTC 151954 ||| || || |||||||| || ||||| |||||||| |||| ||| ||||| |||||||| Sbjct 56675 GACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGATAATGTTCTACCATCTTC 56734 Query 151955 TAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTG 152014 || ||| ||||| || || | ||||| ||||| | | || |||||||| ||||| Sbjct 56735 CAGTTGTTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCCTTATCTTG 56794 Query 152015 AATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTT 152074 ||||||| ||||| | || | |||| ||| || || || || || ||||| || Sbjct 56795 AATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCGACCTCGAGGGTTATAGTCTT 56854 Query 152075 GCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || || ||||| ||||||| |||||| Sbjct 56855 ACCAGTCAGCGTCTTAACGAAGATCTGCAT 56884 Score = 102 bits (112), Expect = 2e-16 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| || || | ||| | |||||| ||||| || ||||| ||||| | | ||||| || Sbjct 56897 TCTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCAGACAGCGTTCTACC 56956 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || || ||||| || || | ||||| ||||| | | || ||||| || Sbjct 56957 ATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCTGGAGGAATACCTTCTTT 57016 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || ||||||||| ||||| | || | |||| ||| || || || || || || Sbjct 57017 GTCCTGAATTTTTGACTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTAT 57076 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 ||||||||| || ||||| || || || | ||||| Sbjct 57077 AGTTTTGCCAGTTAGAGTTTTGACAAAAATTTGCAT 57112 >seq12 Length=1068413 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| || ||||||||||||||||| || | || ||||| |||||||| | Sbjct 493792 CAAG-TGCAAAGTGGATTCTTTTTGGATGTTGTAGTCAGACAAGGTTCTGCCATCTTCCA 493734 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | || || ||||| | | ||| |||||||| ||||| | Sbjct 493733 ATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGA 493674 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | |||| ||| || ||||| || |||||||| || | Sbjct 493673 TCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTAC 493614 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||| | ||||| || Sbjct 493613 CGGTTAAAGTCTTGACGAAAATTTGCATCTT 493583 >seq11 Length=805821 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || || |||||||||||||| || | ||||||||| || ||||| | Sbjct 742750 ATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCCAATTG 742809 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || ||||| ||||| | || || ||||| | | ||| |||||||| ||||| || || Sbjct 742810 CTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTT 742869 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | | |||| ||| || ||||| | ||| || || || || || Sbjct 742870 GGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGT 742929 Query 152081 GAGAGTCTTCACGAAG 152096 | |||||| |||||| Sbjct 742930 CAAAGTCTTAACGAAG 742945 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820548683407