Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq10 93.3 4e-14 seq12 89.7 5e-13 >seq10 Length=750185 Score = 93.3 bits (102), Expect = 4e-14 Identities = 361/561 (64%), Gaps = 15/561 (3%) Strand=Plus/Plus Query 116657 GCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACTGG 116716 ||||| || || |||||||||| || || | || |||| ||||| | |||||| Sbjct 397589 GCCGAAGCCTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCATGACTGG 397648 Query 116717 GAGCGCT---TGAACGACAACGAGCGCCATTTCAT--CAAGCACGTGCTGGCCTTTTTCG 116771 | | ||||||| |||||| | ||| || | || || || |||||||||| Sbjct 397649 AACAACAGAATGAACGAAAACGAGAGATTTTTTATTTCTAGA--GTTCTTGCCTTTTTCG 397706 Query 116772 CCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGG 116831 |||| ||||| || || || || || |||| || ||| || || || || Sbjct 397707 CCGCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCTACCGAAGTTCAAA 397766 Query 116832 TGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAA 116891 | | ||||| | | ||||| || || |||||| || || || | || || |||| Sbjct 397767 TTCCAGAGGCAAAGAGTTTCTATGGTTTCCAGATCATGATTGAAAATATTCATTCTGAAA 397826 Query 116892 TGTATTCGACCCTCATCGACACGTACGT---GCGCTCTTCGGAG-GAGAAGCTCCGTTTG 116947 || || | ||||| || ||| | | | || ||| | ||| || ||| Sbjct 397827 CTTACTCCTTATTGATCGATACCTACATAAAGGACCCTAAGGAAAGTGAAT-TC---TTG 397882 Query 116948 TTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGG 117007 || || ||||| | || || || || ||||||||||||||||| || | ||| Sbjct 397883 TTCAATGCCATTCACACCATCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCTAAGATGG 397942 Query 117008 ATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGC 117067 || | | || ||| || || || | || || ||||| || | |||| || Sbjct 397943 ATTCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCCTCTATCGAAGGT 398002 Query 117068 GTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCC 117127 |||||||| || || ||||| |||| || ||| | ||||| | || | |||||| Sbjct 398003 GTCTTCTTCTCCGGTTCCTTCGCTTCCATTTTCTGGTTGAAGAAGAGAGGTATGATGCCC 398062 Query 117128 GGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCC 117187 || |||| ||| ||||| | || | ||| ||||| ||| |||| ||||||||| Sbjct 398063 GGTTTGACCTTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACTTTGCA 398122 Query 117188 TGTTTGCTGTTCAAGCATTTG 117208 || || ||||| |||||| Sbjct 398123 TGCTTATTGTTCGCCCATTTG 398143 >seq12 Length=1041178 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || | || || |||||||| || | || |||||| | | Sbjct 74706 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 74647 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| ||||| |||||||| |||||||| || || || ||||||| Sbjct 74646 GATACCATTGATAACG-TCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCGGACCA 74588 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 || | | || | || || || || ||||| || | | ||| | ||||||||| Sbjct 74587 ACAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACCTTGTCCGACTACAA 74528 Query 40869 CATCCAGAAGGAGGCCACGCTGCATCTAGTGTT 40901 |||||| |||||| |||| | ||| |||| || Sbjct 74527 CATCCAAAAGGAGTCCACTTTACATTTAGTATT 74495 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219090515920