Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_003083.1 Length=118584 Score E Sequences producing significant alignments: (Bits) Value seq12 105 5e-18 seq9 100 2e-16 >seq12 Length=1041178 Score = 105 bits (116), Expect = 5e-18 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 18099 CCTCCCCGTAGTCTAAGTACCA--TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGG 18156 || || | |||||| | ||| | ||| ||||| || || ||||| ||||||||||||| Sbjct 74480 CCACCTCTTAGTCTTAATACTAAATGTAAAGTG--GACTCCTTTTGGATGTTGTAGTCGG 74537 Query 18157 CCATTGTTTTACAATCTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGG 18216 || ||| ||| |||||||| ||| || || ||| | || | || ||||| ||| | Sbjct 74538 ACAAGGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAG 74597 Query 18217 GCACGCCTTCCTTATCGGCAATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGG 18276 | | ||||| || || ||||| | |||||| | ||| || ||| | ||| Sbjct 74598 GAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGA 74657 Query 18277 TTTCAATGGTGATGCTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 ||| | || ||| |||| |||||||| || || |||||||||||||| Sbjct 74658 CTTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 74706 Score = 98.7 bits (108), Expect = 8e-16 Identities = 153/215 (71%), Gaps = 3/215 (1%) Strand=Plus/Plus Query 18112 TAAGTACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAAT 18171 |||| |||| ||| || || ||||| ||||||||||||||||||| | || | | || Sbjct 73810 TAAG-ACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGATAACGTCCTGCCAT 73868 Query 18172 CTTCCAATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTAT 18231 |||||| ||| || || ||| | || | ||| ||||| ||| || | |||||||||| Sbjct 73869 CTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCCGGAGGAATACCTTCCTTAT 73928 Query 18232 CGGCAAT-TTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATG 18290 | ||| ||| | ||| || | ||| |||||| | || || | ||| ||| Sbjct 73929 CCTGAATCTTGCT-CTTCACGTTATCAATAGTGTCGGACGATTCAACCTCGAGGGTTATG 73987 Query 18291 CTTTTGCCGGTCAATGTTTTTACAAAAATTTGCAT 18325 | || || |||| ||| || |||||||||||||| Sbjct 73988 GTCTTACCCGTCAGTGTCTTAACAAAAATTTGCAT 74022 Score = 95.1 bits (104), Expect = 9e-15 Identities = 148/212 (70%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176 |||| ||| | || ||||| ||||| ||||||||||| | || ||| | | ||||||| Sbjct 481481 ACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCATCTTCC 481422 Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236 ||||| || || ||| |||| | ||||||||| || || | |||||||| || Sbjct 481421 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGG 481362 Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296 || | |||||| | ||| ||||||| | || ||| | ||| || | || Sbjct 481361 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTA 481302 Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328 ||||| || || || || ||||||||||| || Sbjct 481301 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 481270 >seq9 Length=439147 Score = 100 bits (110), Expect = 2e-16 Identities = 141/197 (72%), Gaps = 2/197 (1%) Strand=Plus/Minus Query 18121 TGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATT 18180 ||| ||||| ||||||||||||||||| ||||| | || ||| ||| |||||||||| Sbjct 64670 TGTAAAGTG--GATTCTTTTTGAATGTTATAGTCAGACAAGGTTCTACCGTCTTCCAATT 64613 Query 18181 GTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTT 18240 | || || ||| |||| | ||||||||| || || | |||||||| || ||| | Sbjct 64612 GCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCT 64553 Query 18241 GTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGG 18300 | |||||| | ||| ||||||| | || ||| | |||||| | || || | Sbjct 64552 TTGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAG 64493 Query 18301 TCAATGTTTTTACAAAA 18317 |||| || || |||||| Sbjct 64492 TCAAAGTCTTGACAAAA 64476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 379343921404665