Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq5 235 5e-57 seq10 179 3e-40 seq9 156 4e-33 seq12 111 1e-19 >seq5 Length=1007496 Score = 235 bits (260), Expect = 5e-57 Identities = 461/677 (68%), Gaps = 6/677 (1%) Strand=Plus/Minus Query 23264 GCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGA 23323 || ||||| ||| |||||||||||||| || ||||| | | | ||| | | | | Sbjct 296825 GCTTCAAAATCGTCACCGTAACAGTCGCTTAGACCGGGAGCTGCTGTTGGAGAGAACAAA 296766 Query 23324 CTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 |||| | | | ||| || ||| |||| |||||||| || ||||| ||||| Sbjct 296765 GTCCAAGTCCCATTTTCTTCGACACGTTTCATGAAAAGATCAGGAATCCACAGAGCAGGA 296706 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 |||| || | || || | || ||||| ||| ||||||| | | ||| | ||| || Sbjct 296705 AACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCA 296646 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || | || |||||||| || || ||||| | ||||| || || ||||| || || || Sbjct 296645 AAGATATCAGCATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCA 296586 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| ||||| |||||||| || || || | || | | ||| || | | ||||| Sbjct 296585 CCCTGGTCGACATAACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTA 296526 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || | || | || || | ||||| ||| |||| ||| |||| || | | Sbjct 296525 GAAGTACCATTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGAATATGTAGA 296466 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || | | ||| || |||| || |||| ||||| ||||||||| || ||| Sbjct 296465 CCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCC 296406 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 ||||| |||||| || | |||||||||||||| || |||||||| | ||| || ||| Sbjct 296405 TCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTA 296346 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 | || |||| || || ||| || ||||||||| ||||||| || || Sbjct 296345 CCAGCATTAAACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATAT 296286 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCT-CCGTGTATACCGATGGCGACGCGCATCATCAT 23862 || || | || || || |||| |||| ||||| || || | ||||| | ||| || | Sbjct 296285 GTTTCTAGAGCAGCTTCGATGT-CTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAA 296227 Query 23863 GTATTGAGGTCTCTCGAC--CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATC 23920 || ||| || | ||| | | ||| ||||| ||| | | | ||| ||||||| || Sbjct 296226 GTGTTGTGGACGTTCGGCCACTTGA--CCGTTGATTCTTAGTAAATAAGAACGTTCCAAA 296169 Query 23921 GTTTTAAATCCAAAATA 23937 |||||||| |||||||| Sbjct 296168 GTTTTAAAACCAAAATA 296152 >seq10 Length=750185 Score = 179 bits (198), Expect = 3e-40 Identities = 476/718 (66%), Gaps = 17/718 (2%) Strand=Plus/Plus Query 57591 GCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATTGG 57650 || ||||| || || ||||||| |||||| | || ||||||||||| | || ||| Sbjct 397589 GCCGAAGCCTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCATGACTGG 397648 Query 57651 GATTCCC---TCAAAGAATCTGAGAGAAATTTTATTAAACACGTGTTGGCGTTTTTCGCC 57707 | | | || ||| |||||| ||||||| || | || ||||||||| Sbjct 397649 AACAACAGAATGAACGAAAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGCC 397708 Query 57708 GCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAAGTG 57767 || || || ||||||||||| || || ||||| |||| || || ||||| ||| | Sbjct 397709 GCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCTACCGAAGTTCAAATT 397768 Query 57768 ACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAAATG 57827 | ||||| | | || || || || || | |||||||| | ||||| |||| Sbjct 397769 CCAGAGGCAAAGAGTTTCTATGGTTTCCAGATCATGATTGAAAATATTCATTCTGAAACT 397828 Query 57828 TATTCGCTACTCATCGATACGTACGTGAAGGACAACGACGAGAAACGTAGAC-TGTTCAA 57886 || || || | |||||||| ||| | |||||| | | | || | | | ||||||| Sbjct 397829 TACTCCTTATTGATCGATACCTACATAAAGGAC-CCTAAGGAAAGTGAATTCTTGTTCAA 397887 Query 57887 CGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATAAA 57946 || || | || || || | |||| ||||||| |||||| | | | |||||| | Sbjct 397888 TGCCATTCACACCATCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCTAAGATGGATTCA 397947 Query 57947 AAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATT 58006 | ||| ||| ||| | || || ||| |||| || ||| | |||||||| | || Sbjct 397948 AGACGCTGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCCTCTATCGAAGGTGTCTT 398007 Query 58007 CTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCT 58066 ||| || || ||| || | || || ||| ||||||| | || |||||||||| | Sbjct 398008 CTTCTCCGGTTCCTTCGCTTCCATTTTCTGGTTGAAGAAGAGAGGTATGATGCCCGGTTT 398067 Query 58067 GACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCT 58126 ||| || ||||| ||||| | | ||||| ||| | || || || ||||| ||| | Sbjct 398068 GACCTTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACTTTGCATGCTT 398127 Query 58127 AATGTACTCTCACATTGTCAATAAACC-GACGCGGGATCGCATCTTG--GACATTATCAC 58183 | ||| | | || | || ||||| ||| | | | | ||| | ||| |||| Sbjct 398128 ATTGTTCGCCCATTTGAAGAACAAACCAGACCC---AGCCATTGTTGAAAAAATTGTCAC 398184 Query 58184 CGAGGCGGTCGCGATCGAA-AATG--AGTTTGTCACCGAAGCCCTACCGGTGGCCATGCT 58240 |||||| || | |||||| || | | ||| | || ||| | || || ||| |||| Sbjct 398185 CGAGGCTGTGGAAATCGAACAAAGATACTTTTT---GGACGCCTTGCCAGTTGCCTTGCT 398241 Query 58241 CGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTG 58298 ||||||||| ||| | ||| | || ||||||| ||||| |||||||||||| Sbjct 398242 AGGTATGAACGCTGACCTAATGAACCAATATGTTGAGTTCGTTGCTGACAGACTTTTG 398299 >seq9 Length=439147 Score = 156 bits (172), Expect = 4e-33 Identities = 418/639 (65%), Gaps = 0/639 (0%) Strand=Plus/Plus Query 23341 TTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCG 23400 || ||| ||| |||||||||| || || ||||| ||||| ||||| || | || || Sbjct 235332 TTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCAGGGAACAAATCCCTTGCACG 235391 Query 23401 CACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCA 23460 | || ||||| || | | ||| | | ||| | |||||| || | || |||||||| Sbjct 235392 GATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAGTCGAAGATATCTGCATGCCA 235451 Query 23461 CGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACG 23520 || || | | ||| ||||| || || |||||||| || || || || || || ||||| Sbjct 235452 TGGTTCCAAGAAAAGCGCAAAGGCACCAGGTCTCTTGTTACCTCCTTGGTCCACATAACG 235511 Query 23521 GGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCC 23580 || || |||||| | || | | ||| || | | || || || | ||| || Sbjct 235512 AGCAGTATTGTTGAAAACACGAATCATAGGAATCAACCCATTCGAAGTACCGTTAGTACC 235571 Query 23581 CGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGA 23640 || | | |||||| | | || | ||||| || || | ||| | || || | | Sbjct 235572 GGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGAAGACCAACACCACCTGCAGT 235631 Query 23641 TTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTT 23700 || || ||||| || |||| ||||| ||| || || ||||| || || ||| || || Sbjct 235632 CTTAGAAATCATAGCACATTCTTTCAAAGTATCATAAATGCCTTCAATAGAGTCATCCTT 235691 Query 23701 GGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTAGCGGCCGAGAACAGTGT 23760 | || | | |||||| ||||||||||| | | || ||| | || ||| | || Sbjct 235692 CATGGCAATTAGGAAACATGAAGACATTTGGGGATGTGGAGTACCAGCGTTGAATAAGGT 235751 Query 23761 CGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATC 23820 ||| ||||| || || |||| |||||| | |||||| || | | | | || Sbjct 235752 TGGGGAAGCGTGAGTGAAATATCTTAACGACATCAAATTGTAGGTCTTCAGCACAGACTC 235811 Query 23821 AATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGAC 23880 || || ||||| ||||| | || || ||||| | || || || || | || | Sbjct 235812 GATATCACTACCGTGGATACCCAGCGCCACACGCATAACCAAGTGCTGTGGCCGTTCTGC 235871 Query 23881 CGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTC 23940 | | ||||| | | | | || ||| ||||| | || || || || |||||||| Sbjct 235872 CACTTCACCGTTCAATCTTAGCAAATACGAACGCTCCAAAGTCTTGAACCCAAAATACGT 235931 Query 23941 ATAGTTAAAGTCACGATCGTGCACTATGGCCGAATTCAA 23979 ||| || || || | ||||| ||| || || || ||||| Sbjct 235932 ATACTTGAAATCTCTATCGTACACGATCGCTGAGTTCAA 235970 Score = 96.9 bits (106), Expect = 3e-15 Identities = 156/222 (70%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 31201 TTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGT 31260 ||| || |||||| |||| || || || ||||| | || |||||| | || |||| | | Sbjct 64476 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 64535 Query 31261 CGAAACGGTCAAA-CAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTC 31319 || | ||||| || ||| | | |||||||||| | || || ||||| || | Sbjct 64536 TGACAATGTCAAGTCAAAGATTCAAG-ACAAGGAAGGTATCCCACCTGACCAACAAAGAT 64594 Query 31320 TAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAACATTCAAA 31379 | || || ||||| || || ||||||||| || || || || ||||||||||||| Sbjct 64595 TGATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTATAACATTCAAA 64654 Query 31380 AAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||||| ||| | || | || | ||| |||| || |||| Sbjct 64655 AAGAATCCACTTTACACTTAGTCTTGAGATTGAGAGGTGGTA 64696 >seq12 Length=1041178 Score = 111 bits (122), Expect = 1e-19 Identities = 162/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || ||||| ||||| || || || || ||| |||| |||||| ||||| Sbjct 74022 ATGCAAATTTTTGTTAAGACACTGACGGGTAAGACCATAACCCTCGAGGTTGAATCGTCC 73963 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | || || | || ||| |||||||| | || || ||||| Sbjct 73962 GACACTATTGATAACGTGAAGAGCAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAA 73903 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || || ||||||| | ||| | ||| || ||| Sbjct 73902 CAGAGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGCAGGACGTTATCCGACTACAAC 73843 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 |||||||| ||||| ||||| || ||||| | || ||||||| |||| Sbjct 73842 ATTCAAAAGGAATCTACTCTCCACCTGGTCTTAAGGTTGAGGGGTGGTA 73794 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || || ||||| || || ||||| || ||| | || |||||| | ||| Sbjct 74250 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATAACCCTAGAGGTTGAATCTTCC 74191 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | | || | |||||| | || ||||| || || | || || || || Sbjct 74190 GACACTATTGACAACGTCAAAAGTAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAA 74131 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 || | || || || ||||| || || |||||||| || || || ||||||||| Sbjct 74130 CAAAGACTTATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 74071 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 ||||| |||||||| ||| | ||| | || || ||| | || || |||| Sbjct 74070 ATTCAGAAAGAATCTACTTTGCATTTAGTGCTGAGATTAAGAGGTGGTA 74022 Score = 93.3 bits (102), Expect = 4e-14 Identities = 159/231 (69%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || |||||||||||||| |||||| | || || || || || ||| | || |||||| | Sbjct 481270 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCT 481329 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || |||| | | || | ||||| | || ||||||||||| | || || ||| Sbjct 481330 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGAC 481389 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 || || | | || || ||||| || || |||||||| | ||| || || || Sbjct 481390 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACTTTGTCTGACTAC 481449 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 ||||| ||||| ||||| ||| | || |||| | ||| |||| || ||| Sbjct 481450 AACATCCAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGGT 481500 Score = 84.2 bits (92), Expect = 2e-11 Identities = 156/229 (68%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||||||||| || |||||| |||| || ||||| || || | || || ||| | || Sbjct 74706 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 74647 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | || | ||||| | ||| |||||| ||||| | || || ||||| Sbjct 74646 GATACCATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCGGACCAA 74587 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 ||| | | || || || || || || ||||||| || || || ||| || ||| Sbjct 74586 CAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACCTTGTCCGACTACAAC 74527 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGTA 31421 || ||||| || || ||| | ||| | ||| | ||||| || || |||| Sbjct 74526 ATCCAAAAGGAGTCCACTTTACATTTAGTATTAAGACTAAGAGGTGGTA 74478 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766305274640