Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_003225.3 Length=309286 Score E Sequences producing significant alignments: (Bits) Value seq15 154 3e-32 seq10 123 5e-23 seq5 107 4e-18 >seq15 Length=1052871 Score = 154 bits (170), Expect = 3e-32 Identities = 211/296 (71%), Gaps = 18/296 (6%) Strand=Plus/Minus Query 35333 ATCTGGAACGCTAATGGGTCGCGGGAATTTTTGGACAGTAGAGGGTTATACGATAGAGCA 35392 || ||| ||| |||||| || || |||| | | || | | ||||| |||||| Sbjct 439223 ATTTGGGACGGTAATGGATCCCGTGAATATCTAGATAAGATGGGGTTCACAGATAGAAAG 439164 Query 35393 GAGGGAGATTTGGGACCCGTATACGGATTCCAATGGCGTCATTTTGGTGCTGAATATGAT 35452 | ||| ||||| || ||||| || |||||||||||| | ||||| |||||| |||| | Sbjct 439163 GTGGGGGATTTAGGGCCCGTTTATGGATTCCAATGGAGGCATTTCGGTGCTAAATACAAG 439104 Query 35453 ACCTGTTCTTCCGATTATACTGGAAAGGGTATTGATCAATT------GGCCA---ATATA 35503 |||||| | ||| ||| ||||| |||||||||||||||| || || ||| | Sbjct 439103 ACCTGTGATGACGACTATGCTGGACAGGGTATTGATCAATTGAAGCAGGTCATTCATAAA 439044 Query 35504 CTAAAGACCCTGAGAGAAAATCCAGATGATAGAAGGATGATTATGACGGCATGGAATCCT 35563 |||||||| |||||| |||||||||| || ||||||| || |||||||| Sbjct 439043 CTAAAGAC---------AAATCCTTATGATAGAAGAATTATTATGAGTGCTTGGAATCCA 438993 Query 35564 ATGGATCTTCACCTTATGGCTCTTCCTCCATGCCACATGACTGCTCAATTTTATGT 35619 ||| || || |||||| | || ||||||||||| | | ||||||||||| Sbjct 438992 GCTGATTTTGACAAGATGGCTTTGCCACCATGCCACATTTTTTCACAATTTTATGT 438937 >seq10 Length=750185 Score = 123 bits (136), Expect = 5e-23 Identities = 360/547 (66%), Gaps = 22/547 (4%) Strand=Plus/Plus Query 101820 TCTTGTTTAACGC--TGCACAACACTTCCCCGCCATCAAGAAGAAGGAGCAGTGGGCTAT 101877 ||||||| || || | |||| || |||| | ||| |||||| |||||||| | Sbjct 397878 TCTTGTTCAATGCCATTCACACCA--TCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCT 397935 Query 101878 TAATTGGATGCAAAGCAATAACGATTTG---GCGGAACTAATTGTTGCCTTTGCTGCAGT 101934 | ||||| ||| | | ||| ||| | ||| | | || |||||||| | | Sbjct 397936 AAGATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCCTCTAT 397995 Query 101935 TGAAGGAATCTTCTTTAGTGGTGCATTCGCATCCATTTTCTGGATCAAGAACAGGGGTAT 101994 ||||| ||||||| ||| | ||||| |||||||||||| | ||||| || ||||| Sbjct 397996 CGAAGGTGTCTTCTTCTCCGGTTCCTTCGCTTCCATTTTCTGGTTGAAGAAGAGAGGTAT 398055 Query 101995 TTTGCCTGGTCTCACCTCCTCCAATGAGTTCATTTCTAGGGACGAAGGTCTTCATCGCGA 102054 |||| ||| | |||| ||| || || || |||| || ||||||||| | || ||| Sbjct 398056 GATGCCCGGTTTGACCTTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGA 398115 Query 102055 CTTTGCATGCATGCTGTTGAAAAAGGGTTTTGTTGATACCCCATCAAGAGAAAG-GATTC 102113 |||||||||| | |||| | |||| || | | | ||| || ||| Sbjct 398116 CTTTGCATGCTTATTGTTCGCCCA----TTTGAAGA---ACAAACCAGACCCAGCCATTG 398168 Query 102114 TTG---AAATTGTCACTGAAGCCGTCCGAATTGAACAAGAATTTCTCACAGTTTCCCTGC 102170 ||| |||||||||| || || || ||| |||||| || | | || ||| Sbjct 398169 TTGAAAAAATTGTCACCGAGGCTGTGGAAATCGAACAAAGATACTTTTTGGACGCCTTGC 398228 Query 102171 CTGTTAAATTAGTGGGAATGAACTGCAAGTTGATGAGCCAGTACATTGAATTTGTGGCAG 102230 | ||| || | || |||||| | | |||| ||| || |||| || || || | Sbjct 398229 CAGTTGCCTTGCTAGGTATGAACGCTGACCTAATGAACCAATATGTTGAGTTCGTTGCTG 398288 Query 102231 ATAAACTATTGGTTGAAATGGG--ACTAGAAAAGCACTATAATGTTACCAACCCCTTCCC 102288 | | ||| ||||||| | || || || ||| |||| || || ||||||||| Sbjct 398289 ACAGACTTTTGGTTGCTTTCGGTAACAAG--AAGTACTACAAGGTCGAAAACCCCTTCGA 398346 Query 102289 ATTCATGGACAATATTTCCCTCGAGAATAAGACCAACTTTTTTGAAAAGAGAGTCGCCGA 102348 || ||||| || || ||| | | |||||||||||| |||||||||||||| | || Sbjct 398347 CTTTATGGAAAACATCTCCTTGGCTGGTAAGACCAACTTCTTTGAAAAGAGAGTTTCTGA 398406 Query 102349 GTATCAA 102355 || ||| Sbjct 398407 TTACCAA 398413 >seq5 Length=1007496 Score = 107 bits (118), Expect = 4e-18 Identities = 113/149 (76%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 94189 GAAGCCAAATTGCACACTGCAGTTTCCTCCGAATCACTGTACTGGACAATTTCAGTGCAC 94248 |||||||| || || || |||||||| |||| | | ||||| ||||||||| ||| Sbjct 297059 GAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACAATTTCACAGCAT 297000 Query 94249 AAATTTGAAGACTTGATGATGCCGACATTTTCTTGGTTAGACTTTCTATTGATGGTATCC 94308 || || || |||||||| | || | |||| ||||||||||||||| ||| | |||| Sbjct 296999 AAGTTCGATGACTTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCC 296940 Query 94309 TTAAAGCACACATAAGGTGTTCCAGTTTC 94337 ||| | |||| ||||||| |||||||| Sbjct 296939 TTATAAACCACAAAAGGTGTACCAGTTTC 296911 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 989583784456235