Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_003389.1 Length=146454 Score E Sequences producing significant alignments: (Bits) Value seq9 194 2e-44 seq5 181 1e-40 seq10 158 1e-33 >seq9 Length=439147 Score = 194 bits (214), Expect = 2e-44 Identities = 979/1543 (63%), Gaps = 43/1543 (3%) Strand=Plus/Plus Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179 |||| | |||||| || || || || || ||||| || || | | | || || || Sbjct 234424 AATAAATATGGATTAACGACTTGGAATTCACCAGACAAGACACGACGAGAGTACATGTTT 234483 Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239 ||| |||||||| | || |||| | | |||||||| || || ||||| ||| Sbjct 234484 GAAGTCACTGGTTCAAAACATTCGTTATACCCAAGAATTTGAGAAGTCGAGGCAGTTGGC 234543 Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTA-GTTC 37298 ||||| || ||| | ||||| ||||||||| | ||| |||| ||| | || Sbjct 234544 ATTGGCGCCATTGTCAAAGAGTTTCTTAATCCATGTTTGACAATGTCCTTTCTTAAGGTC 234603 Query 37299 ATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCT 37356 | ||||||||| | | | ||| || | || |||||| ||| ||||||||||||| Sbjct 234604 -TCCCAATCCCACATACCAAATGGCTTAGCATT--CCACATGTCAAATTGTAGAATACCC 234660 Query 37357 TTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAA 37416 ||| ||||||||| | | | || ||| || | ||| || | ||| || Sbjct 234661 TTAGAGGCTGGAGAACCTTCGAAAGTGGAATACTTACCTTCCTTTTGTGCCAATTCACAG 234720 Query 37417 CTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476 | ||| || | |||| ||| || ||||||||||| ||| | || || ||| ||| Sbjct 234721 GAGGCTTCAAGAGTAGCATGATAGATGGTTTCGAAAATCTGTTTGTTCAAAGTTTGAGCT 234780 Query 37477 TCTTCGCTATCGAATGCATAGCC-CAATAATATAAACACATCAGCCAAACCCTGAACACC 37535 |||| || || | ||| | ||| | ||| | ||| |||| ||| |||||||| Sbjct 234781 TCTTTAGATTCAAAGGG-TAGACGCAACATCATATAGGTATCGGCCAGACCTTGAACACC 234839 Query 37536 GATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATT 37595 | | || |||||||| ||| |||| || | | ||| |||||||||||||| Sbjct 234840 CAAGGCAATAGGTCTATGCTTCATATTTGAATTTCTGGCTTCAGGAACTGGATAATAATT 234899 Query 37596 GATATCTATTATTTTATTTAGATTTTTAACTAGT-ATTTTCGTAATTAT-TCTCAACTTG 37653 ||| || | | | || | | || | || | | ||| | |||| | | |||| Sbjct 234900 ACGATCGATGACTCTGTTCA-AGTTATGGGTAATGACTTTGGCAATTTCATGTAAACTC- 234957 Query 37654 TCGAACATAAATACGTT-ATTATTAACAAATTTA-----CTCAACGAA------------ 37695 ||||| || | || | | | ||| || || | ||| || || Sbjct 234958 TCGAAATTATA-ACTTGCAGTTTTACCATCTTCAGACATCTCGACAAATGCTGGGAGAGC 235016 Query 37696 -ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754 ||||| |||||||||| || ||| ||||||| | | | | | | || || Sbjct 235017 AATAGAGGCTAGATTACAAACGGCAGTTTCATCTGGGGAAGAATACTCGACGATTTCACA 235076 Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814 ||| | ||| ||| |||| || ||||| || ||| || | ||| ||||||| || Sbjct 235077 ACACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTATTACATGA 235136 Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874 || || || | || | || || ||| |||| |||| || | | || | | ||| Sbjct 235137 GTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAGATTGCATACCA 235196 Query 37875 TAAACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTGTTTCGTATTCTATATAT 37932 ||| || ||||||| | | |||| | ||| | |||||| ||||| Sbjct 235197 TAACTTTTGGGCTTTAATGGT---TTTACCACGACCTTCCCT--TTCGTAACGGGTATAT 235251 Query 37933 AATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATT 37992 | | | ||| |||| ||||| ||||| ||| ||||| | | ||| | | | Sbjct 235252 AGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAAAAT 235311 Query 37993 AGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCA 38052 | || ||| |||| | || || |||| |||||| | ||||| | ||| | ||| Sbjct 235312 AAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCA 235371 Query 38053 GTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA 38112 | || ||||| | | | |||||| || || | ||||| | | ||| Sbjct 235372 GGGAACAAATCCCTTGCACGGATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAG 235431 Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172 ||||| ||||| || ||||||||||| | ||| || | || || ||||| || | | Sbjct 235432 TCGAAGATATCTGCATGCCATGGTTCCAAGAAAAGCGCAAAGGCACCAGGTCTCTTGTTA 235491 Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232 ||||| || | | ||| | | | || || || | | | | |||||| | | ||| Sbjct 235492 CCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAACCCA 235551 Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292 || || | ||||| |||||| ||||||| ||| | | || || || | || Sbjct 235552 TTCGAAGTACCGTTAGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGA 235611 Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352 | || | ||||||||| || || || | ||| |||| ||| || |||||| | || Sbjct 235612 AGACCAACACCACCTGCAGTCTTAGAAATCATAGCACATTCTTTCAAAGTATCATAAATG 235671 Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412 ||||| ||| ||||||||| || | | || ||||| ||||||||| || |||| Sbjct 235672 CCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGATGTGGA 235731 Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472 || || ||||| ||||| || || || || || |||| || || ||||| |||| Sbjct 235732 GTACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAACGACATCAAATTG 235791 Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532 || || | | ||| || ||||||| ||||| ||||| || | || | ||| | | Sbjct 235792 TAGGTCTTCAGCACAGACTCGATATCACTACCGTGGATACCCAGCGCCACACGCATAACC 235851 Query 38533 ATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592 | || ||||| | |||| | || | ||| | | || | |||||| || || Sbjct 235852 AAGTGCTGTGGCCGTTCTGCCACTTCACCGTTCAATCTTAGCAAATACGAACGCTCCAAA 235911 Query 38593 GTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTA 38633 || || | |||||||| |||| |||| |||||||||||| Sbjct 235912 GTCTTGAACCCAAAATACGTATACTTGAA--ATCTCTATCGTA 235952 >seq5 Length=1007496 Score = 181 bits (200), Expect = 1e-40 Identities = 419/629 (67%), Gaps = 2/629 (0%) Strand=Plus/Minus Query 38006 CATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTT 38065 ||| || ||| || |||| ||| || | |||||| | ||| | |||| ||| |||||| Sbjct 296755 CATTTTCTTCGACACGTTTCATGAAAAGATCAGGAATCCACAGAGCAGGAAACAAATCTC 296696 Query 38066 TGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAG 38125 | | | | |||||| || || |||||||| | | |||||| || ||||||| Sbjct 296695 TTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAGATATCAG 296636 Query 38126 CGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAA 38185 | ||||||||||| | || | | | || || |||||||| | ||| ||||| | | Sbjct 296635 CATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCCTGGTCGA 296576 Query 38186 TATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGT 38245 ||| | | || |||||| | | | | ||| || | || || ||||| | || | Sbjct 296575 CATAACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAAGTACCAT 296516 Query 38246 TTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCAC 38305 || |||| | || |||| ||| | | || || ||| || | || || |||| Sbjct 296515 TTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGAATATGTAGACCAATACCAC 296456 Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365 | ||| ||| || || ||||| |||| ||| || || || | ||||| || ||| || Sbjct 296455 CAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGT 296396 Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425 | ||||| || | | | |||||| ||||||||||| |||||| || || |||| Sbjct 296395 CCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAA 296336 Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485 | || || ||||| ||||| | || ||||| |||| | ||||||||||||| Sbjct 296335 ACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAG 296276 Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTC 38545 || | || || || | ||||| || || || | || ||||| | | |||||||| | Sbjct 296275 CAGCTTCGATGTCTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGAC 296216 Query 38546 TTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAA 38605 ||| | || | || | | |||| ||| || ||| || ||||| | |||| Sbjct 296215 GTTCGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAA 296156 Query 38606 AATAACTATA-TGAATAATCTCTATCGTA 38633 ||||||| || || | ||||||| || || Sbjct 296155 AATAACTGTACTGGA-AATCTCTGTCATA 296128 Score = 149 bits (164), Expect = 6e-31 Identities = 531/816 (65%), Gaps = 17/816 (2%) Strand=Plus/Minus Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873 ||||| | || ||||||| || ||||| || || || | ||| |||| |||||| Sbjct 297965 GATGCGGCTTGGGTTCTCAAGTAGTACATACCGGTCTTCAATCCCTTCTTCCACCCGTAA 297906 Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933 ||||||||||| || || || | || || | | ||| ||| || ||| Sbjct 297905 AAATGCATACTTGTTAGCTTACCCATAGTTGGGGCACGCAAGAATAAATTCAAGGAATGA 297846 Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993 ||| || ||| | || | ||||||||||| | | ||| ||||| || || Sbjct 297845 GATTGGTCGATATAAACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATT 297786 Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATA 37050 ||||| || ||||| |||| | || | | | ||| | || | ||| |||||| Sbjct 297785 TCCCAGACAGTTTTGTATAAGTCCTTCAATTCTTGTGGAACATTTGGTAAACCTTGAATG 297726 Query 37051 GAACCATTATGTAACA-CAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACTTA 37108 || ||||| ||| | ||| | | | ||| || | | || ||| ||| | | | Sbjct 297725 GAGCCATTCTGTGTAATCAAAT--ACTGTTTCATACCCTCATCCCAAATACCTAAATCAA 297668 Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168 | || | || || || || || ||||| || || || || ||||| || | | | Sbjct 297667 CCAAATCGCGCAGTAAGTAAGGGTTCACAACTTGGAATTCACCGGATAAGACACGACGGG 297608 Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228 || || || || |||||||| | ||||||| || |||||||| ||||| | Sbjct 297607 AGTACATGTTAGAGGTGACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGG 297548 Query 37229 ATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGT-ATTAATTC 37285 ||||||||||||||||||| || | ||| | |||| | |||||| | || | || Sbjct 297547 ATGCAGTAGGCATTGGTGCCATGGTCAAAGAGT--TTCTAATACCATGTTTCATGACATC 297490 Query 37286 TCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACC-ACATATCATAT 37344 | | | | | | ||||||||| | | || ||||| || || ||||||| | Sbjct 297489 TTTCCTCAAAGTG-TCCCAATCCCACATGCC-GTAGGGTTTTTGGTCCCACATATCGAAC 297432 Query 37345 TGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTA 37404 || || ||||||| | ||||||||| | | | || || || || |||| ||| | Sbjct 297431 TGAAGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGGCCGTCCTTTTGA 297372 Query 37405 GCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464 |||| ||| ||| || ||| | | ||||| ||| |||||||| || ||||| |||||| Sbjct 297371 GCTAATTCACAAGAAGCTTCCATGGAGGCATGATAAATTGTTTCAAAGATTTGGATATTT 297312 Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524 | || || ||||| ||| || | | | | || ||||| ||||||||| Sbjct 297311 AGTAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATAAAAGTGTCAGCCAAA 297252 Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584 || |||||||| | | || || |||||| || |||| ||||| || |||| ||| | Sbjct 297251 CCTTGAACACCCAAGGCAATTGGCCTATGTCTCATATTGGATCTTCTCGCTTCT-TCAAT 297193 Query 37585 -GGATAATAATTGATATCTATTATTTTATTTAGATT 37619 || || ||||| ||| || | | | |||| ||| Sbjct 297192 GGGGTAGTAATTACGATCAATAACTCTGTTTAAATT 297157 >seq10 Length=750185 Score = 158 bits (174), Expect = 1e-33 Identities = 399/601 (66%), Gaps = 22/601 (4%) Strand=Plus/Minus Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680 |||| ||| || ||||| || || |||||||||||||| | || | ||| ||||| Sbjct 398133 AACAATAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAG 398074 Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740 || || || |||||||||| |||| || || | ||| || || | ||| || ||||| Sbjct 398073 AAGGTCAAACCGGGCATCATACCTCTCTTCTTCAACCAGAAAATGGAAGCGAAGGAACCG 398014 Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG 11800 || ||||| | || || | || ||||| || |||| |||||| ||| | | || Sbjct 398013 GAGAAGAAGACACCTTCGATAGAGGCAAAGGCGACTAGTCTTTCACCAAACAAGGCGTCA 397954 Query 11801 ----CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----ATTG 11852 || || |||||| || ||||| || || |||| || ||| | || | Sbjct 397953 GCGTCTTGA-ATCCATCTTAGAGCCCACTCGGCCTTCTC----ACCGATTTCTGGGATGG 397899 Query 11853 TTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTAT 11910 | | || || || || || | ||| |||| || || ||| || ||||| || Sbjct 397898 TGTGAATGGCATTGAACAA--GAATTCACTTTCCTTAGGGTCCTTTATGTAGGTATCGAT 397841 Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970 ||||| || |||| |||||||||||||| || || || || |||||||||| Sbjct 397840 CAATAAGGAGTAAGTTTCAGAATGAATATTTTCAATCATGATCTGGAAACCATAGAAACT 397781 Query 11971 TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT 12030 |||||||| | || || || | | || |||| | || || ||||| ||||| Sbjct 397780 CTTTGCCTCTGGAATTTGAACTTCGGTAGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 397721 Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090 ||| ||| || || ||||| || || | ||||| || | |||| ||| || Sbjct 397720 ACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTAGAAATAAAAAATCTCTCGT-TTTCGT 397662 Query 12091 TAAT----TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146 | || || | ||| |||| | ||| || || ||||| | ||||||| ||||||| | Sbjct 397661 TCATTCTGTTGTTCCAGTCATGAATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGA 397602 Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206 || || | | | ||||| || |||||| ||||| ||||| |||||||||| || Sbjct 397601 AAGAGGCTTCGGCACGCTTATAAGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAA 397542 Query 12207 C 12207 | Sbjct 397541 C 397541 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 468524700438480