Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03-
21] 17 sequences; 11,929,789 total letters
Query= NC_003389.1
Length=146454
Score E
Sequences producing significant alignments: (Bits) Value
seq9 194 2e-44
seq5 181 1e-40
seq10 158 1e-33
>seq9
Length=439147
Score = 194 bits (214), Expect = 2e-44
Identities = 979/1543 (63%), Gaps = 43/1543 (3%)
Strand=Plus/Plus
Query 37120 AATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTGTATATATATTG 37179
|||| | |||||| || || || || || ||||| || || | | | || || ||
Sbjct 234424 AATAAATATGGATTAACGACTTGGAATTCACCAGACAAGACACGACGAGAGTACATGTTT 234483
Query 37180 CTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAGATGCAGTAGGC 37239
||| |||||||| | || |||| | | |||||||| || || ||||| |||
Sbjct 234484 GAAGTCACTGGTTCAAAACATTCGTTATACCCAAGAATTTGAGAAGTCGAGGCAGTTGGC 234543
Query 37240 ATTGGTGCTATTAGAAGGCTATTTCTCAATCCATGTGTATTAATTCTCTTTTTTA-GTTC 37298
||||| || ||| | ||||| ||||||||| | ||| |||| ||| | ||
Sbjct 234544 ATTGGCGCCATTGTCAAAGAGTTTCTTAATCCATGTTTGACAATGTCCTTTCTTAAGGTC 234603
Query 37299 ATTCCAATCCCATAAATCTGTTGGGTT--CTTTAACCACATATCATATTGTAGAATACCT 37356
| ||||||||| | | | ||| || | || |||||| ||| |||||||||||||
Sbjct 234604 -TCCCAATCCCACATACCAAATGGCTTAGCATT--CCACATGTCAAATTGTAGAATACCC 234660
Query 37357 TTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTAGCTAGTTCGCAA 37416
||| ||||||||| | | | || ||| || | ||| || | ||| ||
Sbjct 234661 TTAGAGGCTGGAGAACCTTCGAAAGTGGAATACTTACCTTCCTTTTGTGCCAATTCACAG 234720
Query 37417 CTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTTAATATTTTTGCT 37476
| ||| || | |||| ||| || ||||||||||| ||| | || || ||| |||
Sbjct 234721 GAGGCTTCAAGAGTAGCATGATAGATGGTTTCGAAAATCTGTTTGTTCAAAGTTTGAGCT 234780
Query 37477 TCTTCGCTATCGAATGCATAGCC-CAATAATATAAACACATCAGCCAAACCCTGAACACC 37535
|||| || || | ||| | ||| | ||| | ||| |||| ||| ||||||||
Sbjct 234781 TCTTTAGATTCAAAGGG-TAGACGCAACATCATATAGGTATCGGCCAGACCTTGAACACC 234839
Query 37536 GATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACTGGATAATAATT 37595
| | || |||||||| ||| |||| || | | ||| ||||||||||||||
Sbjct 234840 CAAGGCAATAGGTCTATGCTTCATATTTGAATTTCTGGCTTCAGGAACTGGATAATAATT 234899
Query 37596 GATATCTATTATTTTATTTAGATTTTTAACTAGT-ATTTTCGTAATTAT-TCTCAACTTG 37653
||| || | | | || | | || | || | | ||| | |||| | | ||||
Sbjct 234900 ACGATCGATGACTCTGTTCA-AGTTATGGGTAATGACTTTGGCAATTTCATGTAAACTC- 234957
Query 37654 TCGAACATAAATACGTT-ATTATTAACAAATTTA-----CTCAACGAA------------ 37695
||||| || | || | | | ||| || || | ||| || ||
Sbjct 234958 TCGAAATTATA-ACTTGCAGTTTTACCATCTTCAGACATCTCGACAAATGCTGGGAGAGC 235016
Query 37696 -ATAGATCCTAGATTACATACAGCAACTTCATCTTCGTTACTAAATTGTATAATCTCTGT 37754
||||| |||||||||| || ||| ||||||| | | | | | | || ||
Sbjct 235017 AATAGAGGCTAGATTACAAACGGCAGTTTCATCTGGGGAAGAATACTCGACGATTTCACA 235076
Query 37755 ACAGAGATTACTCGATCTAATTGTTCCCAAATTGCTTTGATTGGATTTTTTATTACAAGA 37814
||| | ||| ||| |||| || ||||| || ||| || | ||| ||||||| ||
Sbjct 235077 ACACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTATTACATGA 235136
Query 37815 ATCTTTATATAGTATATACGGCGTTCCTTGTTCTATTTGAGCCTCGATAATAGATTTCCA 37874
|| || || | || | || || ||| |||| |||| || | | || | | |||
Sbjct 235137 GTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAGATTGCATACCA 235196
Query 37875 TAAACTTCTTGCTTTAACGATCGCTTTA--AtttttttCTTTGTTTCGTATTCTATATAT 37932
||| || ||||||| | | |||| | ||| | |||||| |||||
Sbjct 235197 TAACTTTTGGGCTTTAATGGT---TTTACCACGACCTTCCCT--TTCGTAACGGGTATAT 235251
Query 37933 AATTTGTTAAAATCATTCCCCCATACATCGCATAATCCTGGACATTCGCATGGACACATT 37992
| | | ||| |||| ||||| ||||| ||| ||||| | | ||| | | |
Sbjct 235252 AGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAAAAT 235311
Query 37993 AGAGACCATTCTTCATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCA 38052
| || ||| |||| | || || |||| |||||| | ||||| | ||| | |||
Sbjct 235312 AAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGAGCA 235371
Query 38053 GTAAATAAATCTTTGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAA 38112
| || ||||| | | | |||||| || || | ||||| | | |||
Sbjct 235372 GGGAACAAATCCCTTGCACGGATTTCTTCTTTACCATGGGTTTTTCTAATATCGACAAAG 235431
Query 38113 TCGAATATATCAGCGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCA 38172
||||| ||||| || ||||||||||| | ||| || | || || ||||| || | |
Sbjct 235432 TCGAAGATATCTGCATGCCATGGTTCCAAGAAAAGCGCAAAGGCACCAGGTCTCTTGTTA 235491
Query 38173 CCTCCCTGATTAATATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCA 38232
||||| || | | ||| | | | || || || | | | | |||||| | | |||
Sbjct 235492 CCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAACCCA 235551
Query 38233 TTAGATTTGCCGTTTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGAC 38292
|| || | ||||| |||||| ||||||| ||| | | || || || | ||
Sbjct 235552 TTCGAAGTACCGTTAGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATATGA 235611
Query 38293 AATCCTATTCCACCTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATA 38352
| || | ||||||||| || || || | ||| |||| ||| || |||||| | ||
Sbjct 235612 AGACCAACACCACCTGCAGTCTTAGAAATCATAGCACATTCTTTCAAAGTATCATAAATG 235671
Query 38353 CCTTCTATACTGTCATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGA 38412
||||| ||| ||||||||| || | | || ||||| ||||||||| || ||||
Sbjct 235672 CCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGATGTGGA 235731
Query 38413 GTTCCGGCGTTAAATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTA 38472
|| || ||||| ||||| || || || || || |||| || || ||||| ||||
Sbjct 235732 GTACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAACGACATCAAATTG 235791
Query 38473 TATGTTTCTATTACATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGC 38532
|| || | | ||| || ||||||| ||||| ||||| || | || | ||| | |
Sbjct 235792 TAGGTCTTCAGCACAGACTCGATATCACTACCGTGGATACCCAGCGCCACACGCATAACC 235851
Query 38533 ATATGTTGTGGTCTTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAAT 38592
| || ||||| | |||| | || | ||| | | || | |||||| || ||
Sbjct 235852 AAGTGCTGTGGCCGTTCTGCCACTTCACCGTTCAATCTTAGCAAATACGAACGCTCCAAA 235911
Query 38593 GTTTTTATTCCAAAATAACTATA--TGAATAATCTCTATCGTA 38633
|| || | |||||||| |||| |||| ||||||||||||
Sbjct 235912 GTCTTGAACCCAAAATACGTATACTTGAA--ATCTCTATCGTA 235952
>seq5
Length=1007496
Score = 181 bits (200), Expect = 1e-40
Identities = 419/629 (67%), Gaps = 2/629 (0%)
Strand=Plus/Minus
Query 38006 CATCTTTTTCTACGCGTTCCATAAATAAATCAGGTACCCATAATGCAGTAAATAAATCTT 38065
||| || ||| || |||| ||| || | |||||| | ||| | |||| ||| ||||||
Sbjct 296755 CATTTTCTTCGACACGTTTCATGAAAAGATCAGGAATCCACAGAGCAGGAAACAAATCTC 296696
Query 38066 TGGTTCTATATTCTTCGTTCCCTACATTCTTTCTTAAGCTTAGAAAATCGAATATATCAG 38125
| | | | |||||| || || |||||||| | | |||||| || |||||||
Sbjct 296695 TTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAGATATCAG 296636
Query 38126 CGTGCCATGGTTCTATATAAATCGACATTGCTCCTGGTCTTTTATCACCTCCCTGATTAA 38185
| ||||||||||| | || | | | || || |||||||| | ||| ||||| | |
Sbjct 296635 CATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCCTGGTCGA 296576
Query 38186 TATATCTAACTGTGTTATTATATATTCTTAACATAGGTACTATACCATTAGATTTGCCGT 38245
||| | | || |||||| | | | | ||| || | || || ||||| | || |
Sbjct 296575 CATAACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAAGTACCAT 296516
Query 38246 TTATACCGGATATATAAGTACCCTTAGCTCGTATATTACTTATCGACAATCCTATTCCAC 38305
|| |||| | || |||| ||| | | || || ||| || | || || ||||
Sbjct 296515 TTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGAATATGTAGACCAATACCAC 296456
Query 38306 CTGCATGTTTTGATATTAAAGCGCATTGTTTTAACGTATCAAATATACCTTCTATACTGT 38365
| ||| ||| || || ||||| |||| ||| || || || | ||||| || ||| ||
Sbjct 296455 CAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGT 296396
Query 38366 CATCCTTTATTGGTAGTATAAAACAACTAGACATTTGAGGCAATGGAGTTCCGGCGTTAA 38425
| ||||| || | | | |||||| ||||||||||| |||||| || || ||||
Sbjct 296395 CCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAA 296336
Query 38426 ATAATGTAGGAGATGCATGTATGAACCATTTTTCCGACAAATAATTATATGTTTCTATTA 38485
| || || ||||| ||||| | || ||||| |||| | |||||||||||||
Sbjct 296335 ACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAG 296276
Query 38486 CATCATCTATATCACCGCCGTGAATACCTAGAGATACCCTCATTAGCATATGTTGTGGTC 38545
|| | || || || | ||||| || || || | || ||||| | | |||||||| |
Sbjct 296275 CAGCTTCGATGTCTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGAC 296216
Query 38546 TTTCTATTATTTTATTATTCTGTTTAAGTAGATACGATTTTTCTAATGTTTTTATTCCAA 38605
||| | || | || | | |||| ||| || ||| || ||||| | ||||
Sbjct 296215 GTTCGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAA 296156
Query 38606 AATAACTATA-TGAATAATCTCTATCGTA 38633
||||||| || || | ||||||| || ||
Sbjct 296155 AATAACTGTACTGGA-AATCTCTGTCATA 296128
Score = 149 bits (164), Expect = 6e-31
Identities = 531/816 (65%), Gaps = 17/816 (2%)
Strand=Plus/Minus
Query 36814 GATGCCGATTTTGTTCTCATATAATACATTCCAGTTTTTAGCCCCAATCTCCATCCGTAA 36873
||||| | || ||||||| || ||||| || || || | ||| |||| ||||||
Sbjct 297965 GATGCGGCTTGGGTTCTCAAGTAGTACATACCGGTCTTCAATCCCTTCTTCCACCCGTAA 297906
Query 36874 AAATGCATACTGGTCAGTTTTGCGTATGTAGGATTATCTATATATATTGTCATTGATTGA 36933
||||||||||| || || || | || || | | ||| ||| || |||
Sbjct 297905 AAATGCATACTTGTTAGCTTACCCATAGTTGGGGCACGCAAGAATAAATTCAAGGAATGA 297846
Query 36934 CTTTGATCTATAAACGCACCTCTGTCGGCTGCCATTTCTAAAATACATTTTTGAGATATC 36993
||| || ||| | || | ||||||||||| | | ||| ||||| || ||
Sbjct 297845 GATTGGTCGATATAAACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATT 297786
Query 36994 TCCCAAACCGTTTTATATATTTGTTTTATATTATCTGGTAAATCT---AAATGTTGAATA 37050
||||| || ||||| |||| | || | | | ||| | || | ||| ||||||
Sbjct 297785 TCCCAGACAGTTTTGTATAAGTCCTTCAATTCTTGTGGAACATTTGGTAAACCTTGAATG 297726
Query 37051 GAACCATTATGTAACA-CAATTGTATTCTTT-ATGTCATTATTCCACATATTTCTACTTA 37108
|| ||||| ||| | ||| | | | ||| || | | || ||| ||| | | |
Sbjct 297725 GAGCCATTCTGTGTAATCAAAT--ACTGTTTCATACCCTCATCCCAAATACCTAAATCAA 297668
Query 37109 TTAGTTCTCTCAATAGGTGTGGATTTACAACCTGAAAATCTCCAGATAATACTCTTCTTG 37168
| || | || || || || || ||||| || || || || ||||| || | | |
Sbjct 297667 CCAAATCGCGCAGTAAGTAAGGGTTCACAACTTGGAATTCACCGGATAAGACACGACGGG 297608
Query 37169 TATATATATTGCTAGTATATGGTTCAATGGACTCATTATTACTTAATATTTGAGATGTAG 37228
|| || || || |||||||| | ||||||| || |||||||| ||||| |
Sbjct 297607 AGTACATGTTAGAGGTGACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGG 297548
Query 37229 ATGCAGTAGGCATTGGTGCTAT--TAGAAGGCTATTTCTCAATCCATGTGT-ATTAATTC 37285
||||||||||||||||||| || | ||| | |||| | |||||| | || | ||
Sbjct 297547 ATGCAGTAGGCATTGGTGCCATGGTCAAAGAGT--TTCTAATACCATGTTTCATGACATC 297490
Query 37286 TCTTTTTTAGTTCATTCCAATCCCATAAATCTGTTGGGTTCTTTAACC-ACATATCATAT 37344
| | | | | | ||||||||| | | || ||||| || || ||||||| |
Sbjct 297489 TTTCCTCAAAGTG-TCCCAATCCCACATGCC-GTAGGGTTTTTGGTCCCACATATCGAAC 297432
Query 37345 TGTAGAATACCTTTACTCGCTGGAGAATCGTTATATGTCTCATAAGGTCCGTAAATTTTA 37404
|| || ||||||| | ||||||||| | | | || || || || |||| ||| |
Sbjct 297431 TGAAGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGGCCGTCCTTTTGA 297372
Query 37405 GCTAGTTCGCAACTAGATTCTAGTGCGGCATAATATATTGTTTCGAAAATTTGTATATTT 37464
|||| ||| ||| || ||| | | ||||| ||| |||||||| || ||||| ||||||
Sbjct 297371 GCTAATTCACAAGAAGCTTCCATGGAGGCATGATAAATTGTTTCAAAGATTTGGATATTT 297312
Query 37465 AATATTTTTGCTTCTTCGCTATCGAATGCATAGCCCAATAATATAAACACATCAGCCAAA 37524
| || || ||||| ||| || | | | | || ||||| |||||||||
Sbjct 297311 AGTAAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATAAAAGTGTCAGCCAAA 297252
Query 37525 CCCTGAACACCGATACCTATGGGTCTATGTTTCTTATTAGATCTAGACGATTCTATCACT 37584
|| |||||||| | | || || |||||| || |||| ||||| || |||| ||| |
Sbjct 297251 CCTTGAACACCCAAGGCAATTGGCCTATGTCTCATATTGGATCTTCTCGCTTCT-TCAAT 297193
Query 37585 -GGATAATAATTGATATCTATTATTTTATTTAGATT 37619
|| || ||||| ||| || | | | |||| |||
Sbjct 297192 GGGGTAGTAATTACGATCAATAACTCTGTTTAAATT 297157
>seq10
Length=750185
Score = 158 bits (174), Expect = 1e-33
Identities = 399/601 (66%), Gaps = 22/601 (4%)
Strand=Plus/Minus
Query 11621 AACATTAAACACGCAAAATCACAATGTAAACCTTCGTCTCTACTTATTAGTTCATTAGAA 11680
|||| ||| || ||||| || || |||||||||||||| | || | ||| |||||
Sbjct 398133 AACAATAAGCATGCAAAGTCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAG 398074
Query 11681 AATGTTAATCCGGGCATCAATCCTCGtttttttATCCAAAATATAGCAGCAAATGAACCA 11740
|| || || |||||||||| |||| || || | ||| || || | ||| || |||||
Sbjct 398073 AAGGTCAAACCGGGCATCATACCTCTCTTCTTCAACCAGAAAATGGAAGCGAAGGAACCG 398014
Query 11741 GAAAAGAATATTCCCTCCACAGCTGCAAATGCTACTACTCTTTCTCCATATACCTTGTTG 11800
|| ||||| | || || | || ||||| || |||| |||||| ||| | | ||
Sbjct 398013 GAGAAGAAGACACCTTCGATAGAGGCAAAGGCGACTAGTCTTTCACCAAACAAGGCGTCA 397954
Query 11801 ----CTAGATATCCATTTTCTGGCCCAATCAGCTTTCTTTTTTACGCATTCC----ATTG 11852
|| || |||||| || ||||| || || |||| || ||| | || |
Sbjct 397953 GCGTCTTGA-ATCCATCTTAGAGCCCACTCGGCCTTCTC----ACCGATTTCTGGGATGG 397899
Query 11853 TTTCTATAGCGTTAAATAAATGCATTT--TTTCTATATTATCTCTTACATATGTATCTAT 11910
| | || || || || || | ||| |||| || || ||| || ||||| ||
Sbjct 397898 TGTGAATGGCATTGAACAA--GAATTCACTTTCCTTAGGGTCCTTTATGTAGGTATCGAT 397841
Query 11911 TAATAAACTATACATTTCTGAATGAATATTTTCCATAGCTATTTGAAATCCATAGAAACA 11970
||||| || |||| |||||||||||||| || || || || ||||||||||
Sbjct 397840 CAATAAGGAGTAAGTTTCAGAATGAATATTTTCAATCATGATCTGGAAACCATAGAAACT 397781
Query 11971 TCGTGCCTCTGAACACTGTACATCCACATAAAATCTTTCCGCTAAATTCTCATTTACAAT 12030
|||||||| | || || || | | || |||| | || || ||||| |||||
Sbjct 397780 CTTTGCCTCTGGAATTTGAACTTCGGTAGAGAAGTTTTCAACCAAGTTTTCATTAACAAT 397721
Query 12031 ACCATCACTAGATGCAAAAAATGCTAGTATATGTTTTATAAAGTATTTTTCGTCTTTAGT 12090
||| ||| || || ||||| || || | ||||| || | |||| ||| ||
Sbjct 397720 ACCGTCAGAAGCGGCGAAAAAGGCAAGAACTCTAGAAATAAAAAATCTCTCGT-TTTCGT 397662
Query 12091 TAAT----TTATCCCAATCATCTAAATCTTTTGATAAATCTACTTCTTCAACGGTCCAAA 12146
| || || | ||| |||| | ||| || || ||||| | ||||||| ||||||| |
Sbjct 397661 TCATTCTGTTGTTCCAGTCATGAATATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGA 397602
Query 12147 AACTTGCCACTGATTGTTTATACATTTTCCAGATATCATGATACTTAATAGGGAAAATAA 12206
|| || | | | ||||| || |||||| ||||| ||||| |||||||||| ||
Sbjct 397601 AAGAGGCTTCGGCACGCTTATAAGCTTGCCAGATTTCATGGTACTTGATAGGGAAAAGAA 397542
Query 12207 C 12207
|
Sbjct 397541 C 397541
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 468524700438480
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