Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_004062.1 Length=119217 Score E Sequences producing significant alignments: (Bits) Value seq12 122 7e-23 >seq12 Length=1041178 Score = 122 bits (134), Expect = 7e-23 Identities = 169/233 (73%), Gaps = 8/233 (3%) Strand=Plus/Plus Query 42892 AGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGT 42951 |||||||| || ||||| | |||| ||||||||| | ||||| |||||||| || | Sbjct 74489 AGTCTTAATACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTA 74548 Query 42952 TCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCT 43011 | || |||| ||| || |||||||||||||| | |||||| || | || | ||||||| Sbjct 74549 CCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGAATACCTTCT 74608 Query 43012 TTTTCGCTGATCAACTCT---TTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACC 43068 || || |||| | | | ||||| | ||| || || || ||||| || | Sbjct 74609 TTGTC-CTGA--ATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGACTTCCAAT 74665 Query 43069 GTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT--TTTCTTAATT 43119 ||||| ||||| ||||| | ||| || |||||||||||||| | ||||| || Sbjct 74666 GTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCATAATGTCTTAGTT 74718 Score = 114 bits (126), Expect = 1e-20 Identities = 157/217 (72%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 42894 TCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTC 42953 ||| | ||| ||||| | ||| || || || | || ||||| |||| || | | Sbjct 74035 TCTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCAGACAGCGTTCTACC 74094 Query 42954 GTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTT 43013 ||| |||| ||| || || |||||||| | || |||||||| | || | ||| ||||| Sbjct 74095 GTCTTCCAGTTGCTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGGATACCCTCTTT 74154 Query 43014 TTCGCTGATCA-ACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTA 43072 || |||| ||| |||||| || ||| |||||| || || || |||| |||| Sbjct 74155 GTCTTGGATCTTACT-TTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTA 74213 Query 43073 TAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 ||||||| || ||||||||||| |||||||||||||| Sbjct 74214 TAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 74250 Score = 109 bits (120), Expect = 4e-19 Identities = 164/230 (71%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || || || |||| ||| ||||||||| | |||||| |||||| Sbjct 74252 CCACCTCTCAATCTCAAGACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGGAC 74311 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||| ||| || |||||||||||||| | |||||| || | || Sbjct 74312 AAGGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGA 74371 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCT---TTGACTCTGCCAACTGTGTCGCCAGCCTCG 43059 | ||||||||| || |||| | | | ||||| || | | |||||| || ||| Sbjct 74372 ATACCTTCTTTGTC-CTGA--ATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCG 74428 Query 43060 ACGTCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 || || | |||||||| || || || || || || ||||| || ||||| Sbjct 74429 ACCTCGAGGGTTATAGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 74478 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 42883 CCTCCACGCAGTCTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGAC 42942 || || | || ||| || ||||| || | |||| |||||||| | ||||| || ||| Sbjct 481499 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAC 481440 Query 42943 AATGTACGTTCGTCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGC 43002 || || | | || |||||||| || || ||||| ||||||| ||||| || | || Sbjct 481439 AAAGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 481380 Query 43003 ACACCTTCTTTTTCGCTGATCAACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACG 43062 | |||||| || || |||| ||||| || ||| ||||| || || || Sbjct 481379 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 481320 Query 43063 TCTACCGTTATAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCATTTT 43112 |||| || ||||| || ||||||| ||| || || ||||||||||| || Sbjct 481319 TCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTT 481270 Score = 93.3 bits (102), Expect = 3e-14 Identities = 154/217 (71%), Gaps = 4/217 (2%) Strand=Plus/Plus Query 42895 CTTAACACCAAATGGATAGTGCTCTCCTTTTGCACATTGTAATCGGACAATGTACGTTCG 42954 ||||| |||| |||| ||| |||||||| | ||||| ||||| || || | | Sbjct 73808 CTTAAGACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGATAACGTCCTGCCA 73867 Query 42955 TCGTCCAATTGTTTGCCGGCAAAAATCAATCGCTGTTGATCGGCCGGCACACCTTCTTTT 43014 || |||| ||| || |||||||||||||||| |||||| || | || | |||||| || Sbjct 73868 TCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCCGGAGGAATACCTTCCTTA 73927 Query 43015 TCGCTG-ATC-AACTCTTTGACTCTGCCAACTGTGTCGCCAGCCTCGACGTCTACCGTTA 43072 || ||| ||| ||| || || | ||| |||||| | || || || | |||| Sbjct 73928 TC-CTGAATCTTGCTC-TTCACGTTATCAATAGTGTCGGACGATTCAACCTCGAGGGTTA 73985 Query 43073 TAGTTTTTCCGGTTAGAGTTTTCACAAAAATTTGCAT 43109 | || || || || || || || |||||||||||||| Sbjct 73986 TGGTCTTACCCGTCAGTGTCTTAACAAAAATTTGCAT 74022 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381369520984986