Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq12 194 4e-44 seq10 181 2e-40 seq9 141 2e-28 seq11 132 1e-25 >seq12 Length=1041178 Score = 194 bits (214), Expect = 4e-44 Identities = 181/230 (79%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || || |||| ||| || ||||||||||||||||| ||||| ||| Sbjct 74021 ATACCACCTCTTAATCTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCA 74080 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || || |||||||||||||| ||||| || ||||||||||| || || |||||||| || Sbjct 74081 GACAGCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATAAGTCTTTGTTGATCTGGT 74140 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || || ||||| || || ||||| ||| || || || | || ||| || ||| Sbjct 74141 GGGATACCCTCTTTGTCTTGGATCTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCA 74200 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 |||||||| || ||||| |||||||| || ||||| ||||| || ||||| Sbjct 74201 ACCTCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 74250 Score = 167 bits (184), Expect = 5e-36 Identities = 175/230 (76%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| || | ||||| || || |||||||| ||||| Sbjct 74249 ATACCACCTCTCAATCTCAAGACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCG 74308 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||| ||||| ||||| || || |||||||| | ||||||||| || ||| Sbjct 74309 GACAAGGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGA 74368 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || |||||||| |||||||| |||| || || || || | || ||| || ||| Sbjct 74369 GGAATACCTTCTTTGTCCTGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCG 74428 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCAT 104559 ||||| || || |||||||||||||| || || || ||||| |||||||| Sbjct 74429 ACCTCGAGGGTTATAGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 74478 Score = 143 bits (158), Expect = 6e-29 Identities = 152/198 (77%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 |||||||| || ||||| || ||||| |||| || || || ||||| ||||| || || Sbjct 73826 GTAGATTCCTTTTGAATGTTGTAGTCGGATAACGTCCTGCCATCTTCCAGTTGCTTACCG 73885 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCT-TT 104481 |||||||| | |||||||| || ||||| || ||||| |||||||||||| ||||| || Sbjct 73886 GCAAAAATCAATCTCTGTTGGTCCGGAGGAATACCTTCCTTATCCTGAATC-TTGCTCTT 73944 Query 104482 TACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGT 104541 || || || | || ||| | ||| ||||| || || || |||||||| || ||||| Sbjct 73945 CACGTTATCAATAGTGTCGGACGATTCAACCTCGAGGGTTATGGTCTTACCCGTCAGTGT 74004 Query 104542 TTTTACAAATATCTGCAT 104559 || ||||| || ||||| Sbjct 74005 CTTAACAAAAATTTGCAT 74022 Score = 125 bits (138), Expect = 2e-23 Identities = 152/207 (73%), Gaps = 0/207 (0%) Strand=Plus/Minus Query 104357 TGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGT 104416 || || || ||||| || || || || |||||||| | |||||| || ||||| | ||| Sbjct 481475 TGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCATCTTCCAATTGC 481416 Query 104417 TTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTT 104476 || |||||||| || | || ||||| ||||| || || ||||| || || || ||||| Sbjct 481415 TTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTTG 481356 Query 104477 GCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTA 104536 | || ||||| || | || || || ||| || ||||| |||||||||||||| || Sbjct 481355 GACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTACCGGTT 481296 Query 104537 AGTGTTTTTACAAATATCTGCATTTTG 104563 | || || || || || ||||| ||| Sbjct 481295 AAAGTCTTGACGAAAATTTGCATCTTG 481269 >seq10 Length=750185 Score = 181 bits (200), Expect = 2e-40 Identities = 379/556 (68%), Gaps = 28/556 (5%) Strand=Plus/Plus Query 268754 GCCGTTGCTTCTTTTTGGACTGTAGAAGAAGTAGATCTGTCTTATGAC-TTAATAGATTG 268812 |||| || ||||| ||||| | |||||| | ||| ||||| | || || || || || Sbjct 397589 GCCGAAGCCTCTTTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCAT-GACTG 397647 Query 268813 GAAAAATTTAA--AACCAGAA-GAAAGAAGATTTATATCTTATATTCTTGCGTTTTTTGC 268869 ||| || || ||| | || || ||| ||||| ||| ||||||| ||||| || Sbjct 397648 GAACAACAGAATGAACGAAAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGC 397707 Query 268870 AGTTAGTGATGGTATCGTTAACGAAAATCTAGTAGAGAAGTTCTGTCAAGAGGTACAGAT 268929 | | ||| ||||| ||||| ||||| | || || || |||| | || || || || Sbjct 397708 CGCTTCTGACGGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCTACCGAAGTTCAAAT 397767 Query 268930 TCCTGAAGCCAGATGTTTTTACGGATTCCAGATAGCTATAGAAAATATTCATTCAGAGAT 268989 ||| || || | |||| || || |||||||| || |||||||||||||| || | Sbjct 397768 TCCAGAGGCAAAGAGTTTCTATGGTTTCCAGATCATGATTGAAAATATTCATTCTGAAAC 397827 Query 268990 GTACAGTCTATTAATAGATACTTATATAGATGATAACAACGAAAAGAAAAGACTATT-TT 269048 ||| |||| || ||||| || ||| | || | ||| |||| ||| || Sbjct 397828 TTACTCCTTATTGATCGATACCTACATAAAGGA------CCCTAAGGAAAGTGAATTCTT 397881 Query 269049 CTTCTATGAGA-----ACTAT----GGACTGTGTGAGaaaaaaaTCTGAATGGGCTCTGA 269099 ||| ||| | || || | | | ||||||| | || |||||||| | Sbjct 397882 GTTCAATGCCATTCACACCATCCCAGAAATCGGTGAGAAGG----CCGAGTGGGCTCTAA 397937 Query 269100 AATGGATAAACGATAGCG-CGCCTTAC--GGAGAAAGGTTAGTTGCTTTTGCCGCTGTAG 269156 |||||| | || | |||||| || ||||| |||| || |||||| || | | Sbjct 397938 GATGGATTCAAGACGCTGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCCTCTATCG 397997 Query 269157 AAGGTATATTCTTTTCGGGGTCTTTTGCCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTA 269216 ||||| | ||||| || || || || || | || || ||||||||||| ||||| | | Sbjct 397998 AAGGTGTCTTCTTCTCCGGTTCCTTCGCTTCCATTTTCTGGTTGAAGAAGAGAGGTATGA 398057 Query 269217 TGCCAGGATTAACTTTCTCTAACGAATTGATAAGCAGGGACGAAGGTTTACACTGCGACT 269276 |||| || || || ||||||||||||||||| |||| ||||||||||| ||| ||||| Sbjct 398058 TGCCCGGTTTGACCTTCTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACT 398117 Query 269277 TCGCTTGTTTATTATT 269292 | || || ||||| || Sbjct 398118 TTGCATGCTTATTGTT 398133 >seq9 Length=439147 Score = 141 bits (156), Expect = 2e-28 Identities = 164/221 (74%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||| | || | |||| ||||| || |||||||| ||||| ||||||||| Sbjct 64697 ATACCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTATAGTCA 64638 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || | |||||||||||||| | ||| || |||||||| || | || ||||| ||||| Sbjct 64637 GACAAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGT 64578 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || |||||||||| || ||||| || | || || || ||| Sbjct 64577 GGGATACCTTCCTTGTCTTGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCA 64518 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 || || | || || ||||||||||| | || || ||||| Sbjct 64517 ACTTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAA 64477 >seq11 Length=681961 Score = 132 bits (146), Expect = 1e-25 Identities = 153/206 (74%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 || || ||||||| || | || | |||||| || ||||| || || || || |||||| Sbjct 632814 ATACCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCA 632873 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 |||| ||||||||||||||| | ||| || || ||||| || | || ||||| ||||| Sbjct 632874 GATAAAGTTCTACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGT 632933 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || || ||||| || || || ||||| | || ||||| || | ||| || || ||| Sbjct 632934 GGGATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCA 632993 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGT 104535 || |||| || || ||||||||||| Sbjct 632994 ACTTCTAAAGTGATGGTCTTACCAGT 633019 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398149211036