Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq15 147 3e-30 seq2 107 2e-18 >seq15 Length=1052871 Score = 147 bits (162), Expect = 3e-30 Identities = 304/451 (67%), Gaps = 35/451 (8%) Strand=Plus/Plus Query 6810 TTGTTCTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAAT 6869 ||||||||| | |||| || || || ||||| ||| ||||| ||||| |||||||| Sbjct 438714 TTGTTCTTTCAAGGCTTCAATGTGGTCCTTATAAACATGTGCATCCCCTAGAGTATGAAT 438773 Query 6870 AAATTCACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGA 6929 ||| |||||||| | ||| || ||| ||| |||||| | || || | ||||| || Sbjct 438774 AAACTCACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAGAGCATATGA 438833 Query 6930 AGCTACATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTG--ATAACAT---TGA 6984 || | |||||| ||||| || |||||||| || || | ||| |||||| ||| Sbjct 438834 TGCAATATTAAATGGTACGCCCAATCCCATGTCACAAGAACGTTGGTATAACAAACATGA 438893 Query 6985 CAAGA------TAAAATATTG-------TCTATAG---------CATAAAATTGACACAA 7022 | | || | || ||| | | |||||||||| | || Sbjct 438894 TAGGCGGGGCTTACCAGATCCGTCTCCTTCTTTGGGGAAACTGACATAAAATTGTGAAAA 438953 Query 7023 TACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAA 7082 | || ||||| || ||| | || || | ||||| ||||||||||||| |||| | Sbjct 438954 AATGTGGCATGGTGGCAAAGCCATCTTGTCAAAATCAGCTGGATTCCAAGCACTCATAAT 439013 Query 7083 AATACGTCTATCATTTGGATTTGTTTTTAATTT-TGTTATAATTATTTG---TAATTGAT 7138 ||| | |||||||| |||||||| |||| ||| || ||| | || ||||||| Sbjct 439014 AATTCTTCTATCATAAGGATTTGTCTTTAGTTTATG----AATGACCTGCTTCAATTGAT 439069 Query 7139 CTATACCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCC 7198 | |||||||| || |||| | || ||| | | || ||||| || ||||| |||| Sbjct 439070 CAATACCCTGTCCAGCATAGTCGTCATCACAGGTCTTGTATTTAGCACCGAAATGCCTCC 439129 Query 7199 ATTGAAACCCATAAATAGGACCTAAATCACC 7229 |||| || ||||||| || |||||||| || Sbjct 439130 ATTGGAATCCATAAACGGGCCCTAAATCCCC 439160 Score = 96.9 bits (106), Expect = 4e-15 Identities = 127/176 (72%), Gaps = 0/176 (0%) Strand=Plus/Minus Query 19328 GTTAAAATTAAATTAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTT 19387 |||||| || ||||| || | || | ||| |||| ||||| || ||||| ||| | Sbjct 579814 GTTAAAGTTCGTGTAAGAACTACAAAGGTTCCTCAAATTGGTGACAAATTTGCCTCTCGT 579755 Query 19388 ACTGCTCAAAAAGGCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAA 19447 || |||||| || || |||||| | |||||| |||||||||||| ||||| | Sbjct 579754 CATGGTCAAAAGGGTACTATTGGTATCACATATCGTAGAGAAGATATGCCATTTACAGCA 579695 Query 19448 GATGGTATAGTGCCGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 || ||||| || |||||| | || || || || || ||| ||||| ||| ||||| Sbjct 579694 GAAGGTATTGTTCCGGATTTAATCATCAATCCTCACGCTATTCCATCTCGTATGAC 579639 Score = 89.7 bits (98), Expect = 6e-13 Identities = 112/151 (74%), Gaps = 2/151 (1%) Strand=Plus/Minus Query 19354 AATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTAT 19413 || ||||||| |||||||||| ||| ||||| || ||||||||| |||||||| Sbjct 690219 AAGACCTGAATTAGGTGATAAATTTTCTTCTAGACATGGTCAAAAAGGTGTTTGTGGTAT 690160 Query 19414 GATT-TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTA 19472 ||| || | ||||||||||||||||||| | | |||||||| || || |||| | Sbjct 690159 TATTGTAAAG-CAAGAAGATATGCCTTTTAACGATCAAGGTATAGTTCCAGACATTATCA 690101 Query 19473 TTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | || || || | ||| ||| ||| ||||| Sbjct 690100 TGAATCCTCACGGTTTCCCATCTCGTATGAC 690070 >seq2 Length=801843 Score = 107 bits (118), Expect = 2e-18 Identities = 385/591 (65%), Gaps = 32/591 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| |||| || ||||| | ||| ||||||| || ||||| ||| || Sbjct 385120 AAGTTTGAAGATTTGGGTGTCGGTGGTTTGGATAAAGAATTTACTAAAATTTTTAGAAGA 385061 Query 164458 GCATTTGCTTCTAGATCAGTTCCT--ATCGAAATAATaaaaaaaTTAGGCTGTAAACATA 164515 || ||||| | || |||| ||| | | ||| |||| | || | || Sbjct 385060 GCTTTTGCAAGTCGAATTTTTCCGCCATC--AGTTATAGAAAAGCTGGGTATTTCTCACG 385003 Query 164516 TAAAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCA 164575 | ||||| | ||||| | || ||||| ||| ||||| || ||||| || || | Sbjct 385002 TCAAAGGTTTGTTATTGTACGGTCCTCCGGGTACTGGTAAGACCTTAATTGCAAGAAAGA 384943 Query 164576 TTGCT-CAAGCTTTTAAATCGC---GACCCGTTAAAATTGTTAATGGTCCTGAATTATTG 164631 ||| | ||| | | ||| | || || ||||| || || ||||||||| | ||| Sbjct 384942 TTGGTACAA--TGCTGAATGCCAAAGAGCCC--AAAATCGTCAACGGTCCTGAAATTTTG 384887 Query 164632 AACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAA 164691 | || || || || || || | ||| || | || || ||| |||| || |||| | Sbjct 384886 AGTAAGTACGTTGGATCTTCGGAGGAGAATATTCGTAATTTATTTAAGGATGCCGAAGCA 384827 Query 164692 GAACAAAAGAAAGC--AGGTTTAGCTA--GTAAATTACATGTTATTGTTTTTGATGAGAT 164747 ||| | | || ||| | || | || |||||| | ||| |||||||||| | Sbjct 384826 GAATATCGG---GCCAAGGGTGAGGAATCGTCC-TTACATATCATTATTTTTGATGAACT 384771 Query 164748 AGATGCTCTTTGCAAAAA---------ACGTGGTGATAATATTATTCATGATG-CAGTG- 164796 ||| || ||| ||| | | | |||||| || | | || || || Sbjct 384770 GGATTCTGTTTTCAAGCAGAGAGGTTCAAGAGGTGATGGTACCGGTGTAGGTGACAATGT 384711 Query 164797 -GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGT 164855 |||||||| || | ||||||| |||||||| || || |||||||| || || | Sbjct 384710 AGTTAATCAATTATTAGCTAAAATGGATGGTGTTGATCAATTGAATAATATATTGGTTAT 384651 Query 164856 AGGTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGA 164915 |||||||||||||| |||||||| ||| |||| | ||||| || ||| |||| || Sbjct 384650 TGGTATGACCAACCGTAAGGATTTAATAGATAGTGCTCTTTTACGTCCAGGTAGATTTGA 384591 Query 164916 ATTGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966 | | || | ||||| ||||| ||| || ||||| | || |||||||| Sbjct 384590 AGTCCAAGTTGAAATTCATTTACCGGACGAAAAAGGAAGACTCCAAATTTT 384540 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595871873377200