Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq14 125 1e-24 seq2 104 4e-18 >seq14 Length=769517 Score = 125 bits (138), Expect = 1e-24 Identities = 190/268 (71%), Gaps = 2/268 (1%) Strand=Plus/Plus Query 16433 GCTAAGCGTCATCG-CAGATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 |||||||||||| | |||| ||| |||||||||||||||| ||||| ||||||||||| Sbjct 553332 GCTAAGCGTCATAGAAAGAT-TCTAAGAGATAACATCCAAGGTATCACTAAGCCAGCTAT 553390 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | | ||| | | ||||| ||||||||| | ||||| ||| |||| ||||| | Sbjct 553391 CAGAAGATTAGCTAGAAGAGGTGGTGTCAAGCGTATTTCTGGTTTGATCTACGAAGAAGT 553450 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| ||||| |||| | || |||| ||| || || | || || || Sbjct 553451 CAGAGCTGTCTTGAAATCCTTCTTGGAGTCCGTCATCAGAGACTCTGTTACTTACACTGA 553510 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || || ||||| | || || || ||||| | ||||| Sbjct 553511 ACACGCCAAGAGAAAGACTGTTACTTCTTTGGATGTTGTTTACGCTTTGAAGAGACAAGG 553570 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAA 16699 | | | |||||||| || ||||| Sbjct 553571 TAGAACCTTATATGGTTTCGGTGGTTAA 553598 >seq2 Length=801843 Score = 104 bits (114), Expect = 4e-18 Identities = 186/269 (69%), Gaps = 2/269 (1%) Strand=Plus/Minus Query 16433 GCTAAGCGTCATCGCA-GATCTCTTCGAGATAACATCCAAGGAATCACCAAGCCAGCTAT 16491 || |||||||| | | ||| ||| |||| ||||| ||||| ||||| ||||||||||| Sbjct 246896 GCCAAGCGTCACAGAAAGAT-TCTAAGAGACAACATTCAAGGTATCACTAAGCCAGCTAT 246838 Query 16492 CCGTCGTCTGGCTCGTCGTGGTGGAGTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGAT 16551 | | | ||| | | ||||| ||||||||| ||||||| ||| |||| ||||| | Sbjct 246837 TAGAAGATTAGCTAGAAGAGGTGGCGTCAAGCGTATCTCTGGTTTGATCTACGAAGAAGT 246778 Query 16552 TCGTGATGTTTTGAAGATCTTCCTCAAGACCGTTATCCATGATGCTTTCCACTATACCGA 16611 | | ||| ||||| |||| | | |||| ||| || || | || || || Sbjct 246777 CAGAGCTGTCTTGAAATCCTTCTTGGAATCCGTCATCAGAGACTCTGTTACTTACACTGA 246718 Query 16612 GCACGCTAAACGTAAGACTGTCACCTCCATGGATATCGTCTATGCATTGAAACGTCAAGG 16671 ||||| || | |||||||| || || ||||| | || ||||| || || | ||||| Sbjct 246717 ACACGCCAAGAGAAAGACTGTTACTTCTTTGGATGTTGTTTATGCTTTAAAGAGACAAGG 246658 Query 16672 CCGTAAGATTTATGGTTTTGGAAGTTAAT 16700 | | | |||||||| || |||||| Sbjct 246657 TAGAACCTTATATGGTTTCGGTGGTTAAT 246629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79075184456781