Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq5 235 1e-56 seq15 120 8e-22 >seq5 Length=1007496 Score = 235 bits (260), Expect = 1e-56 Identities = 712/1078 (66%), Gaps = 49/1078 (5%) Strand=Plus/Plus Query 363547 TTCACGCACGCCACGCCAACAATGTACAATGCTGGAACTCGTAATCCACAGATGTCTTCT 363606 || || || ||| | ||||| ||| |||||||| |||| || || || ||||| ||| Sbjct 296311 TTTACTCATGCCTCTCCAACTTTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCT 296370 Query 363607 TGCTTTCTTC-TAAAAATGAAGGACGATTCCATCGAGGGTATCTTTGACACACTTAAGAA 363665 || |||||| | |||||||| || || ||||||||||| | ||||| | || | Sbjct 296371 TG-TTTCTTGGTCGCCATGAAGGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGA 296429 Query 363666 TTGTGCTCTTATTTCCAAGAATGCAGGCGGAATTGGTGTATCGATCCACAATGTTCGTGC 363725 |||||| | |||||||| | ||| || || |||||| || || || || ||||| | Sbjct 296430 ATGTGCTTTGATTTCCAAAACTGCTGGTGGTATTGGTCTACATATTCATAACATTCGTTC 296489 Query 363726 ACAGAACAG----TTACATTCGCGGCACAGGGGGATAC-TCGAATGGGCTGGTTCCCATG 363780 ||| | ||||||| || ||| || ||| || || ||| | |||||||| Sbjct 296490 ----AACTGGTTCTTACATTGCTGGTACAAATGG-TACTTCTAACGGGTTAATTCCCATG 296544 Query 363781 CTTCGTGTGTTTGACAATACTGCGAGGTACGTCGACCAGGGTGG--AGGAAAGCGCAAAG 363838 ||||||| ||| | ||||| || | || |||||||||||||| | |||| | | Sbjct 296545 ATTCGTGTTTTTAATAATACCGCCCGTTATGTCGACCAGGGTGGTAACAAAAGACC--TG 296602 Query 363839 GGGCGTTTGCTATGTATCTCGAGCCTCATCATGCCGATATTTTTGAGTTTCTTGAGCTCC 363898 | || |||||| |||| || || || ||||| ||||| ||||| ||| |||| || Sbjct 296603 GTGCCTTTGCTCTGTACCTGGAACCATGGCATGCTGATATCTTTGATTTTATTGATATCA 296662 Query 363899 GGAAAAACACGGGAAAAGAGGAATTGCGTGCACGTGATCTGTTCTATGCACTTTGGGTTT 363958 | || ||| || ||||| ||| | |||||| | ||| |||| ||| || ||| || Sbjct 296663 GAAAGAACCACGGTAAAGAAGAAATTCGTGCAAGAGATTTGTTTCCTGCTCTGTGGATTC 296722 Query 363959 CTGACCATTTTATGAAGCGCGTGGAGGCAGGTAAGAATTGGTCACTCTTTTGCCCACACG 364018 |||| | ||| ||||| || || || | | | || |||| | | || | ||| | Sbjct 296723 CTGATCTTTTCATGAAACGTGTCGAAGAAAATGGGACTTGGACTTTGTTCTCTCCAACAG 296782 Query 364019 AATGTCCAGGTCTTTCCGA-TGTATGGGGTGACGACTATGTTGCTCTATACGAAAAGTAT 364077 | ||| ||||| ||| ||| | |||||||| | || |||||||| || Sbjct 296783 CAGCTCCCGGTCTAAGCGACTGT-TACGGTGACGATTTTGAAGCTCTATATACCCGCTAC 296841 Query 364078 GAATCGGAGGGAAAGGC-TCGTAAGACAATTCCCGCACAGAAGCTATGGTTTGCCATCAT 364136 ||| | ||| | | | ||||||| ||| || || || |||||| | |||| | Sbjct 296842 GAA----AAAGAAGGTCGTGGTAAGACCATTAAAGCTCAAAAATTATGGTATTCCATTTT 296897 Query 364137 GGATTCGCAGATTGAGACAGGAACACCCTATATGTTGTACAAAGATTCGTGCAACCGCAA 364196 ||| | || | ||| || || ||||| | | || | || || ||| | |||||| | || Sbjct 296898 GGAAGCACAAACTGAAACTGGTACACCTTTTGTGGTTTATAAGGATGCTTGCAACAGAAA 296957 Query 364197 GTCCAACCAGCAGCACCTTGGTACAATTCAG-CAGAGCAACCTATGTACCGAGATTATTG 364255 ||| ||||| | || | ||| || || || | ||| |||| || ||| ||| Sbjct 296958 GTCTAACCAAAAAAACTTGGGTGTTATCAAGTCATCG-AACTTATGCTGTGAAATTGTTG 297016 Query 364256 AATACACCGCTCCCGACGAGACTGCCGTATGTAACCTTGCGTCGATCGCGCTTCCGGCGT 364315 | ||| | ||||| ||||| ||||| || |||||| | || || | || | || |||| Sbjct 297017 AGTACTCAGCTCCGGACGAAACTGCTGTTTGTAACTTGGCTTCCGTTGCCTTGCCAGCGT 297076 Query 364316 ---TTGTAA------AAGATGG---TACTTTTGACCACCAGCATC-----TTTATGACGT 364358 ||| || | || || |||| | || || | || ||| ||| Sbjct 297077 TCATTGAAACGTCAGAGGACGGCCAAACTTCT-ACTTACAACTTCAAAAAATTA-CACGA 297134 Query 364359 AA---CCTATCATGCTACTTGCAATCTCGACAAGGTTATCGACAAGAATTATTATCCAAT 364415 || || | || |||| | ||| | ||| ||||| || ||||| || || || Sbjct 297135 AATTGCCAAAGTTGTTACTCGTAATTTAAACAGAGTTATTGATCGTAATTACTACCCCAT 297194 Query 364416 TCCTGAAGCCGAG-CGTTCTAATATGCGTCATCGCCCGATTGGTCTTGGTGTACAGGGCC 364474 | |||| |||| | || |||||| | ||| | || |||| | ||||| || || Sbjct 297195 TGAAGAAG-CGAGAAGATCCAATATGAGACATAGGCCAATTGCCTTGGGTGTTCAAGGTT 297253 Query 364475 TCGCTGACGTTTTTATGATGCTCAAGATGGCATTTGATTCGCCTGACGCTCGTGTTCTAA 364534 | |||||| ||||||| |||| | | |||||||| || || ||| | |||| Sbjct 297254 TGGCTGACACTTTTATGTTGCTACGTTTACCCTTTGATTCTGAAGAGGCCCGTTTACTAA 297313 Query 364535 ATAAGGAGATCTTTGAAACAATGTATTTTGCCGCAATGACTGCTTCGTGTGATTTGGC 364592 ||| | |||||||||||||| ||| |||| | ||| ||||| ||||| || || Sbjct 297314 ATATCCAAATCTTTGAAACAATTTATCATGCCTCCATGGAAGCTTCTTGTGAATTAGC 297371 >seq15 Length=1052871 Score = 120 bits (132), Expect = 8e-22 Identities = 209/299 (70%), Gaps = 10/299 (3%) Strand=Plus/Minus Query 111419 TGTAAAAATTTGGGATGGAAATGGATCACGTGACTTTCTAGATTCAGTTGGTCTTGTC-G 111477 ||| || |||||||| || |||||||| ||||| | ||||||| || ||| || | | Sbjct 439230 TGTTAAGATTTGGGACGGTAATGGATCCCGTGAATATCTAGATA-AGATGGGGTTCACAG 439172 Query 111478 ACAACGAAGAAGGTGATCTCGGACCAGTTTACGGATTTCAATGGCGCCACTTTGGTGCAG 111537 | | | | || ||| | || || ||||| ||||| |||||| | || || ||||| Sbjct 439171 ATAGAAAGGTGGGGGATTTAGGGCCCGTTTATGGATTCCAATGGAGGCATTTCGGTGCTA 439112 Query 111538 ACTACAAAACC----ATGCACGACTCATATGATTCACAGGGAACTGATCAATTACAGAAT 111593 | ||||| ||| ||| |||||| ||| | |||||| | ||||||||| || | Sbjct 439111 AATACAAGACCTGTGATG-ACGACT---ATGCTGGACAGGGTATTGATCAATTGAAGCAG 439056 Query 111594 GTCATTGATCAAATTAAGAACAACCCAACTTCTCGTCGCATTATTATGAGTGCATGGAAC 111653 |||||| || || | |||| || || | | | | |||||||||||||| ||||| Sbjct 439055 GTCATTCATAAACTAAAGACAAATCCTTATGATAGAAGAATTATTATGAGTGCTTGGAAT 438996 Query 111654 CCAAATGCATTGGAAAAAATGGCACTTCCACCATGTCATCTTATGTGCCAGTTTTATGT 111712 ||| || || || || ||||| | |||||||| || || | | || |||||||| Sbjct 438995 CCAGCTGATTTTGACAAGATGGCTTTGCCACCATGCCACATTTTTTCACAATTTTATGT 438937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303353316113294