Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq12 131 2e-25 seq11 84.2 2e-11 >seq12 Length=1041178 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Plus Query 45123 AGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTA 45182 || || || |||| ||| | || || ||||||||||| || || ||| | |||| || Sbjct 74489 AGTCTTAATACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTTCTA 74548 Query 45183 GAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCT 45242 ||| |||| ||| || || || | ||||| | || |||||||| ||||| |||||| Sbjct 74549 CCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGAATACCTTCT 74608 Query 45243 TTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGT 45301 || || ||||||||| |||| || | || | ||| || ||||| |||||||| | || Sbjct 74609 TTGTCCTGAATTTTTGACTTGA-CGTTATCAATGGTATCAGAAGATTCGACTTCCAATGT 74667 Query 45302 AACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 | ||||| ||||| | ||| || |||||||||||||| Sbjct 74668 TATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 74706 Score = 125 bits (138), Expect = 6e-24 Identities = 159/216 (74%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| |||| || || || || |||||||| ||||| || ||| | |||| || | Sbjct 74264 CTCAAGACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGGACAAGGTTCTACCA 74323 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | ||||| | || |||||||| ||||| |||||||| Sbjct 74324 TCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGAATACCTTCTTTG 74383 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 || ||||||||| |||| || | || | ||||||||||| ||||| ||||| || | Sbjct 74384 TCCTGAATTTTTGACTTGA-CGTTGTCGATCGTGTCGGAAGATTCGACCTCGAGGGTTAT 74442 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || ||||| || ||||| Sbjct 74443 AGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 74478 Score = 113 bits (124), Expect = 4e-20 Identities = 156/216 (72%), Gaps = 2/216 (1%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 |||| ||||| ||||| || ||||| || || || |||||||| | ||| || Sbjct 74036 CTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCG 74095 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||| ||| || || || | || | || ||| || || || || || || ||||| Sbjct 74096 TCTTCCAGTTGCTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGGATACCCTCTTTG 74155 Query 45246 TCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAAC 45304 ||||| || || ||||| || | || | ||||||||||| || || || || || | Sbjct 74156 TCTTGGATCTTACTTTTGA-CGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTAT 74214 Query 45305 CGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 ||||| || ||||||||||| |||||||||||||| Sbjct 74215 AGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 74250 Score = 113 bits (124), Expect = 4e-20 Identities = 185/264 (70%), Gaps = 7/264 (3%) Strand=Plus/Minus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | |||| || |||||||||||||| || || || | ||| | | Sbjct 481487 CTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCA 481428 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || ||||| || Sbjct 481427 TCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 481368 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || |||| || | ||||| ||||| || ||||| || |||| Sbjct 481367 TCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATA 481308 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC---GC---GCGACCAATTTAATAA 45359 || || ||||||| ||| || || |||||||||||| || || | || || | || Sbjct 481307 GTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTGGCTTGTCGGCAAAATTTA-AA 481249 Query 45360 TTTAACTCTTATTTTCTTACTAAG 45383 ||||||| | |||||||| ||| Sbjct 481248 TTTAACTGCTTCTTTCTTACCAAG 481225 Score = 100 bits (110), Expect = 3e-16 Identities = 154/217 (71%), Gaps = 2/217 (1%) Strand=Plus/Plus Query 45125 CCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGA 45184 ||| || || || || || || ||||||||||| || || || ||| | || | Sbjct 73807 CCTTAAGACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGATAACGTCCTGCC 73866 Query 45185 ATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTT 45244 ||| |||| ||| || || || | ||||||| || |||||||| ||||| ||||| || Sbjct 73867 ATCTTCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCCGGAGGAATACCTTCCTT 73926 Query 45245 ATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAA 45303 ||| ||||| || || | || | || | |||||||| || || || ||||| || | Sbjct 73927 ATCCTGAATCTTGCTCTTCA-CGTTATCAATAGTGTCGGACGATTCAACCTCGAGGGTTA 73985 Query 45304 CCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCAT 45340 || || || || || || || |||||||||||||| Sbjct 73986 TGGTCTTACCCGTCAGTGTCTTAACAAAAATTTGCAT 74022 >seq11 Length=681961 Score = 84.2 bits (92), Expect = 2e-11 Identities = 142/206 (69%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 45126 CTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAA 45185 ||||| || | ||| | || |||||||||||||| || || || | ||| || Sbjct 632829 CTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCG 632888 Query 45186 TCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTA 45245 || |||||||| || || || | ||||||| ||| ||||| || || || ||||| || Sbjct 632889 TCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTG 632948 Query 45246 TCTTGAATTTTTTGTTTGATCGCTTCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACC 45305 ||||| || || |||| || | |||||| ||||| || ||||| | ||| | Sbjct 632949 TCTTGGATCTTGGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATG 633008 Query 45306 GTTTTGCCGGTTAGAGTTTTTACAAA 45331 || || || || | ||| || || || Sbjct 633009 GTCTTACCAGTCAAAGTCTTAACGAA 633034 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003103949320