Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_015280.1 Length=181044 Score E Sequences producing significant alignments: (Bits) Value seq5 107 2e-18 >seq5 Length=1007496 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 153205 TTATAGGTCAAGGATACTATGGAACCATTACACCCCCAGTCATACAGCGAAACGTTCTTG 153264 |||| ||| | || || || || || ||| ||| ||||| || || ||||| | | | Sbjct 708991 TTATCGGTAAGGGTTATTACGGTACGATTTTACCACCAGTTATTCAAAGAAACCTGTTGG 709050 Query 153265 AGAATCCTAGTTGGTACACATCTTACACTCCCTATCAAGCTGAGATATCTCAGGGAAGAT 153324 | | |||| ||||| || ||||| ||||||||||| |||| ||||| || || || Sbjct 709051 AAAGTCCTGAATGGTATACTTCTTATACTCCCTATCAGCCTGAAATATCACAAGGTAGGC 709110 Query 153325 TGGAAGCTTTATTCAATTACCAAACGCTCATCACAGAACTTACAGGATTACCAATAGCAA 153384 | ||||| |||| |||| ||||| || | |||| | || || || || | || | Sbjct 709111 TTGAAGCGCTATTGAATTTTCAAACAGTCGTTTCAGATTTGACCGGTTTGCCTGTGGCCA 709170 Query 153385 ACGCATCTCTATTAGATGAAGCAACTGCAGCAGCAGAAGCAATGCTATT 153433 |||| || | || ||||||| |||||||| | || || |||||||| Sbjct 709171 ACGCCTCATTGTTGGATGAAGGTACTGCAGCTGGTGAGGCTATGCTATT 709219 Score = 107 bits (118), Expect = 2e-18 Identities = 323/492 (66%), Gaps = 20/492 (4%) Strand=Plus/Plus Query 154602 ATCACAGGGTTTGATTCTATATCATTACAACCTAACGCAGGATCACAGGGTGAGTATGCA 154661 || ||||| || ||| ||| || ||||||||||| |||| |||| ||||| || | Sbjct 710439 ATTACAGGTTTCGATGGTATTTCTTTACAACCTAATTCAGGTGCACAAGGTGAATACACC 710498 Query 154662 GGACTGTTAGCAATCCAAGCATACCATCAAGGATCAGGAGATGATAAAAGAAATGTATGT 154721 || || || |||| | | ||| || | || || | | | || |||||| Sbjct 710499 GGTTTGAGAGTAATCAGATCTTACTTGGAAAGCAAGGGTGAAAGTCACCGTAACGTATGT 710558 Query 154722 TTGATACCAGAGTCAGCACATGGAACTAATCCTGCTAGTGCTGTCATGGCAGGGATGAAA 154781 || || || | || || ||||| || ||||| ||| ||||| |||||| || ||||| Sbjct 710559 TTAATCCCCGTTTCTGCTCATGGCACAAATCCAGCTTCTGCTGCCATGGCGGGTTTGAAA 710618 Query 154782 GTTGTAGGTGTCAAGTGTGATGATGATGGTAACATAGACATCAAAGATCTAGA-GA---A 154837 ||||| |||||| ||| | |||||| | | | ||||| | || | Sbjct 710619 GTTGTTCCTGTCAACTGTTTACAGGATGGTT-CTTTG--------GATCTGGTTGACTTA 710669 Query 154838 GAAAGCAATCATGAATA-CATTT----GAACTGTCATGTATTATGATTACATACCCATCT 154892 ||| ||| |||| | |||| ||||| | | ||||| || || || ||| Sbjct 710670 AAAACCAAGGCTGAAAAGCATTCTAAAGAACTAGCTGCCGTAATGATCACCTATCCTTCT 710729 Query 154893 ACACATGGTGTATTTGAAACTAACATTAGACA-GATATGTAAGATCGTTCATGACAATGG 154951 || ||||| |||||||| | ||| ||| | ||| | | ||||| ||| | ||| Sbjct 710730 ACTTATGGTTTATTTGAACCAGGCATCCAACATGCTAT-TGATATCGTGCATTATTTTGG 710788 Query 154952 TGGTCAGGTATATCTTGATGGAGCAAATCTAAATGCACAGGTAGGACTAGCAAAACCATG 155011 ||| || |||||| | ||||| || ||| | || || ||||| || || | |||| | Sbjct 710789 TGGGCAAGTATATTTGGATGGTGCTAATATGAACGCGCAGGTTGGGTTAACTTCACCAGG 710848 Query 155012 TGAGTATGGTGCAGATGTATGTCATCTAAACTTACATAAAACATTCTGTATTCCACATGG 155071 || |||||||||||| || || | || || || || ||||| | || || ||||| Sbjct 710849 AGATCTTGGTGCAGATGTCTGCCACTTGAATTTGCACAAGACATTTTCCATCCCTCATGG 710908 Query 155072 AGGTGGAGGTCC 155083 || || ||||| Sbjct 710909 TGGCGGTGGTCC 710920 Score = 98.7 bits (108), Expect = 1e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 153768 CAAAGGTTTGGTATTCCTATGGGATATGGAGGTCCTCATGCTGCATTCTTTGCAACAACA 153827 ||| | |||||| | || ||||| ||||| |||||||||||||| || ||||| | Sbjct 709575 CAACGATTTGGTGTCCCAATGGGTTATGGTGGTCCTCATGCTGCCTTTTTTGCTGTCATT 709634 Query 153828 GACAAGTATAAGAGAAAGATACCTGGCAGAATTGTAGGTCAGTCAGTAGATAGTGAAGGT 153887 || |||| || ||||| || || ||||||||||| || ||| ||| | ||| Sbjct 709635 GATAAGTTAAATAGAAAAATTCCAGGCAGAATTGTCGGCGTGTCTAAAGACCGCTTAGGG 709694 Query 153888 AATAAAGCATACAGATTAGCACTACAGACTAGAGAGCAGCATATCAGGAGAGACAAAGCA 153947 || | || | | || || || || ||||||||||| || |||| | | || || ||| Sbjct 709695 AAAACGGCCTTGCGTTTGGCCCTCCAAACTAGAGAGCAACACATCAAGCGTGATAAGGCA 709754 Query 153948 ACCAGTAACATCTGCACAGCTCAGGCACTGCTGGCTAAT 153986 || || || || || ||||| || || |||||||| Sbjct 709755 ACTTCAAATATTTGTACCGCTCAAGCTCTATTGGCTAAT 709793 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 579212676917280