Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03-
21] 17 sequences; 11,929,789 total letters
Query= NC_015960.1
Length=175699
Score E
Sequences producing significant alignments: (Bits) Value
seq10 226 3e-54
seq9 212 7e-50
seq5 203 4e-47
>seq10
Length=750185
Score = 226 bits (250), Expect = 3e-54
Identities = 598/910 (66%), Gaps = 5/910 (1%)
Strand=Plus/Minus
Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729
||||| || || | |||||| ||||||||||| || || || || | || || || |
Sbjct 398415 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTT 398356
Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789
|||||||| || || || |||| || || || || ||| || || | | |
Sbjct 398355 TCCATAAAGTCGAAGGGGTTTTCGACCTTGTAGTACTTCTTGTTACCGAAAGCAACCAAA 398296
Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849
||||| || || || || | || |||| |||||| | ||| ||||| |||| ||
Sbjct 398295 AGTCTGTCAGCAACGAACTCAACATATTGGTTCATTAGGTCAGCGTTCATACCTAGCAAG 398236
Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909
||| || | || || || || |||||| || | || ||||| | | |||
Sbjct 398235 GCAACTGGCAAGGCGTCCAAAAAGTATCTTTGTTCGATTTCCACAGCCTCGGTGACAATT 398176
Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAA 18969
| |||| | || | || || | ||| |||| || ||||||||
Sbjct 398175 TTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAATAAGCATGCAAAG 398116
Query 18970 TCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATC 19029
|| || | || |||||||| | |||||||| ||||| || || ||||| ||||||
Sbjct 398115 TCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCGGGCATC 398056
Query 19030 AGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCT 19089
| ||||| || || |||||||| || ||||| || || || || ||||| | ||||||
Sbjct 398055 ATACCTCTCTTCTTCAACCAGAAAATGGAAGCGAAGGAACCGGAGAAGAAGACACCTTCG 397996
Query 19090 ACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCATTT 19148
| | ||||| || ||||||||||| ||| ||| | || ||| | ||||||||| |
Sbjct 397995 ATAGAGGCAAAGGCGACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCATCT 397937
Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208
|| ||||| || ||||||| | ||| || || | || | ||| || | |
Sbjct 397936 TAGAGCCCACTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAGAA 397877
Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268
|| || | | || || | || | ||| |||||||| ||| |||| |||||
Sbjct 397876 TTCACTTTCCTTAGGGTCCTTTATGTAGGTATCGATCAATAAGGAGTAAGTTTCAGAATG 397817
Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328
||||||||| || ||||| || || || |||| |||| |||| || || |||||
Sbjct 397816 AATATTTTCAATCATGATCTGGAAACCATAGAAACTCTTTGCCTCTGGAATTTGAACTTC 397757
Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388
|| | || |||| ||||| ||||||||||| || || ||| ||| || ||||| ||
Sbjct 397756 GGTAGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAGGC 397697
Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTAAT 19445
| || ||||||| | | || | | | | | | | ||||| |||| |||
Sbjct 397696 AAGAACTCTAGAAATAAAAAATCTCTCGTTTTCGTTCATTCTGTTGTTCCAGTCATGAAT 397637
Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505
||| ||||| ||||| | ||||||| | ||||| ||||| || || || |||||
Sbjct 397636 ATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAGGCTTCGGCACGCTTATAAGC 397577
Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAG 19565
| ||| || ||| | || | ||||| || | |||| ||| | || | || || |
Sbjct 397576 TTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTTTCCTTGTCCTCATTCAA 397517
Query 19566 AATAGGTTCC 19575
| |||||||
Sbjct 397516 CAAAGGTTCC 397507
>seq9
Length=439147
Score = 212 bits (234), Expect = 7e-50
Identities = 533/809 (66%), Gaps = 3/809 (0%)
Strand=Plus/Plus
Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936
|| || ||||| ||||||||||| || || |||| ||| || ||| | | |||
Sbjct 235012 AGAGCAATAGAGGCTAGATTACAAACGGCAGTTTCATCTGGGGAAGAATACTCGACGATT 235071
Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996
||| ||| | ||| |||| || |||||||| || || || || | | |||
Sbjct 235072 TCACAACACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTATTA 235131
Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056
|||| ||||||||||| ||| |||||||| || |||||| | || | || | ||| |
Sbjct 235132 CATGAGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAGATTGCA 235191
Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116
| ||| | | | | | ||||| | | | || | | || |||||| |||
Sbjct 235192 TACCATA-ACTTTTGGGCTTTA--ATGGTTTTACCACGACCTTCCCTTTCGTAACGGGTA 235248
Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176
|||| || ||||||||||| || | |||| |||||| || || || | ||| |
Sbjct 235249 TATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAA 235308
Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236
| || | ||| | |||| | || || | ||||||| | || || ||||| |||
Sbjct 235309 AATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGA 235368
Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296
|| || |||||||| | | | |||||| || ||| | || ||| || | |
Sbjct 235369 GCAGGGAACAAATCCCTTGCACGGATTTCTTCTTTACCATGGGTTTTTCTAATATCGACA 235428
Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356
||||| | ||||| |||||||||||||| || | | || | |||| |||| ||
Sbjct 235429 AAGTCGAAGATATCTGCATGCCATGGTTCCAAGAAAAGCGCAAAGGCACCAGGTCTCTTG 235488
Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416
||||||||||| || | ||| | ||||||||||| |||| | | ||| || | |
Sbjct 235489 TTACCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAAC 235548
Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476
||||| || |||| || || || | |||||| || | | | || || ||||
Sbjct 235549 CCATTCGAAGTACCGTTAGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 235608
Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536
|| ||| | ||||||||| | ||||| || | |||||| ||| | |||||||||
Sbjct 235609 TGAAGACCAACACCACCTGCAGTCTTAGAAATCATAGCACATTCTTTCAAAGTATCATAA 235668
Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596
|| ||||| ||| ||||| |||| | ||| ||||| ||||||||| |||||
Sbjct 235669 ATGCCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGATGT 235728
Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656
||| || | || ||||| ||||| || || ||| | || || | || | |||
Sbjct 235729 GGAGTACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAACGACATCAAA 235788
Query 48657 TTATATGTTTCAATAACAGAATCTATATC 48685
|| || || | | ||||| || |||||
Sbjct 235789 TTGTAGGTCTTCAGCACAGACTCGATATC 235817
>seq5
Length=1007496
Score = 203 bits (224), Expect = 4e-47
Identities = 729/1129 (65%), Gaps = 38/1129 (3%)
Strand=Plus/Minus
Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017
|||||| |||||| |||| || ||| |||| || || ||||| |||| || |
Sbjct 296987 TTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCCTTATAAACCACA 296928
Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077
|||||||| |||||||| | || | ||| | || || | ||| | | ||| ||
Sbjct 296927 AAAGGTGTACCAGTTTCAGTTTGTGCTTCCAAAATGGAATACCATAATTTTTGAGCTTTA 296868
Query 48078 ATAACAGCTCT-AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136
|| | ||| | | | || | |||||| ||||||| ||||| || ||
Sbjct 296867 AT----GGTCTTACCACGACCTTCTTTTTCGTAGCGGGTATATAGAGCTTCAAAATCGTC 296812
Query 48137 CCCATACACATTATCTAAC-CCAGGACATTCATTAGGACACATCAATGACCAATCCTCAT 48195
|| || ||| | || | || ||| | | | ||| | | ||| | |||| | |||
Sbjct 296811 ACCGTA-ACAGTCGCTTAGACCGGGAGCTGCTGTTGGAGAGAACAAAGTCCAAGTCCCAT 296753
Query 48196 CATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAG 48255
| || || | |||| || | ||| || ||||| ||||| ||| ||||| || |
Sbjct 296752 TTTCTTCGACACGTTTCATGAAAAGATCAGGAATCCACAGAGCAGGAAACAAATCTCTTG 296693
Query 48256 TTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCAT 48315
| | |||||| || || ||| || | | |||| ||| || | ||||||||||
Sbjct 296692 CACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAGATATCAGCAT 296633
Query 48316 GCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATAT 48375
|||||||||| | || | || | |||| |||| ||| ||||| || || || | ||
Sbjct 296632 GCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCCTGGTCGACAT 296573
Query 48376 ATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGG 48435
| | ||| ||||| ||| |||| | | ||| || | | || || || ||||||| |
Sbjct 296572 AACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAAGTACCATTTG 296513
Query 48436 TTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTG 48495
| || | ||| ||| ||| | | | || ||| ||| | ||| |||||||| |
Sbjct 296512 TACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGAATATGTAGACCAATACCACCAG 296453
Query 48496 CCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCAT 48555
| |||| || || | |||||| ||| | || || ||||| || || ||| || |
Sbjct 296452 CAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCT 296393
Query 48556 CTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATA 48615
| |||| | | |||||| |||||||| || | ||| || | |||||| |
Sbjct 296392 CCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACA 296333
Query 48616 ATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAG 48675
| |||||||| |||||| |||| |||| || | || ||||||||||| | | |||
Sbjct 296332 AAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCAG 296273
Query 48676 AATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTT 48735
|| || || | || || || | | || | ||| | | | ||| || | ||
Sbjct 296272 CTTCGATGTCTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTT 296213
Query 48736 CAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAAT 48795
| | | || || ||| | | | ||| || |||||| ||||||||||||||||
Sbjct 296212 CGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAAT 296153
Query 48796 AGTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-T 48853
| |||| || ||| || | |||| | ||||| || |||| | | || |||| ||
Sbjct 296152 AACTGTACTGGAAA-TCTCTGTCATAGACAATTGCAGAGTTTAATTTATCTTTATTTTCC 296094
Query 48854 AT----ATACTACATCCATT-----ACATTTTTTGA-------TA----TA-----ATTG 48888
|| ||||| | |||| | || | || || || |||
Sbjct 296093 ATGACAATACTGTAGACATTGTCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCGTTG 296034
Query 48889 A-TTCCTTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGA 48947
| | | ||||||||||| ||||| | | |||| |||| | |||| |||||| | |
Sbjct 296033 ACATATCTATAAAGATCTTCGACAACTTTAGAAAATTGTTTTGTAGTTTGTTTATGTAAA 295974
Query 48948 TTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTA 49007
||||| || | |||||||||||||| |||| ||||||||||||| || || ||||||
Sbjct 295973 TTAGAAATGGCAATTCTAGCAGCTAAGGTAGCGTAATCTGGATGAACAGTGGT-CATGTA 295915
Query 49008 C-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCT 49055
| | || ||||||| ||||| | |||| ||| | || || ||||||
Sbjct 295914 CGCACATGTTTCTGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCT 295866
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 562108680551880
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