Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_015960.1 Length=175699 Score E Sequences producing significant alignments: (Bits) Value seq10 226 3e-54 seq9 212 7e-50 seq5 203 4e-47 >seq10 Length=750185 Score = 226 bits (250), Expect = 3e-54 Identities = 598/910 (66%), Gaps = 5/910 (1%) Strand=Plus/Minus Query 18670 TTTTGATATTCGGCAACTCTTTTTTCAAAGAAATTAGTTTTTCCCTCTAATGATATACAT 18729 ||||| || || | |||||| ||||||||||| || || || || | || || || | Sbjct 398415 TTTTGGTAATCAGAAACTCTCTTTTCAAAGAAGTTGGTCTTACCAGCCAAGGAGATGTTT 398356 Query 18730 TCCATAAAATCAAATGGATTTTTTACATTATATAtttttttGAATCCTAATTCTAATAGT 18789 |||||||| || || || |||| || || || || ||| || || | | | Sbjct 398355 TCCATAAAGTCGAAGGGGTTTTCGACCTTGTAGTACTTCTTGTTACCGAAAGCAACCAAA 398296 Query 18790 AGTCTATCCGCTACAAATTTAATATATGTGTTCATCATATCACAATTCATTCCTATTAAT 18849 ||||| || || || || | || |||| |||||| | ||| ||||| |||| || Sbjct 398295 AGTCTGTCAGCAACGAACTCAACATATTGGTTCATTAGGTCAGCGTTCATACCTAGCAAG 398236 Query 18850 TTAACAGGTAGTGCATCTGTAAGAAATTCTTGTTCTATATTTACTGCCTCTGATATAATA 18909 ||| || | || || || || |||||| || | || ||||| | | ||| Sbjct 398235 GCAACTGGCAAGGCGTCCAAAAAGTATCTTTGTTCGATTTCCACAGCCTCGGTGACAATT 398176 Query 18910 GATACAACTCTATCTTCATTAGGAGGGTATAGAAGATGTTTAAACATCAAACATGCAAAA 18969 | |||| | || | || || | ||| |||| || |||||||| Sbjct 398175 TTTTCAACAATGGCTGGGTCTGGTTTGTTCTTCAAATGGGCGAACAATAAGCATGCAAAG 398116 Query 18970 TCACAATGTAGTCCCTCGTCTCTACTTATCAATTCATTAGAAAATGTTAAACCAGGCATC 19029 || || | || |||||||| | |||||||| ||||| || || ||||| |||||| Sbjct 398115 TCGGTGTGCAAACCTTCGTCTCTGCAAATCAATTCGTTAGAGAAGGTCAAACCGGGCATC 398056 Query 19030 AGTCCTCttttttttAACCAGAATATAGAAGCAAATGATCCAGAAAAGAATATACCTTCT 19089 | ||||| || || |||||||| || ||||| || || || || ||||| | |||||| Sbjct 398055 ATACCTCTCTTCTTCAACCAGAAAATGGAAGCGAAGGAACCGGAGAAGAAGACACCTTCG 397996 Query 19090 ACTGCTGCAAAAGCAACTAGTCTTTCTCCATAACTA-GCATCATTATTATGAATCCATTT 19148 | | ||||| || ||||||||||| ||| ||| | || ||| | ||||||||| | Sbjct 397995 ATAGAGGCAAAGGCGACTAGTCTTTCACCA-AACAAGGCGTCAGCGTCTTGAATCCATCT 397937 Query 19149 CAGTGCCCAATCAGCCTTCTTTTTTACACATGGCATTGTCTCTATAGAATTAAATAGATA 19208 || ||||| || ||||||| | ||| || || | || | ||| || | | Sbjct 397936 TAGAGCCCACTCGGCCTTCTCACCGATTTCTGGGATGGTGTGAATGGCATTGAACAAGAA 397877 Query 19209 CATACGCTCATCTGTATCTTTAACATATGCATCTATCAATAAACTGTACATTTCTGAATG 19268 || || | | || || | || | ||| |||||||| ||| |||| ||||| Sbjct 397876 TTCACTTTCCTTAGGGTCCTTTATGTAGGTATCGATCAATAAGGAGTAAGTTTCAGAATG 397817 Query 19269 AATATTTTCTATAGCCATCTGAAATCCGTAAAAACATCTTGCTTCTGTTATCTGTACTTC 19328 ||||||||| || ||||| || || || |||| |||| |||| || || ||||| Sbjct 397816 AATATTTTCAATCATGATCTGGAAACCATAGAAACTCTTTGCCTCTGGAATTTGAACTTC 397757 Query 19329 ACTACAAAATCTTTCGACCAAATTTTCATTAACTATTCCATCACTAGCTGCAAAAAATGC 19388 || | || |||| ||||| ||||||||||| || || ||| ||| || ||||| || Sbjct 397756 GGTAGAGAAGTTTTCAACCAAGTTTTCATTAACAATACCGTCAGAAGCGGCGAAAAAGGC 397697 Query 19389 TAATACATGTTTAATAAAATGTTTTTCATCTGAGGTTAAT---GTATTCCAATCATTAAT 19445 | || ||||||| | | || | | | | | | | ||||| |||| ||| Sbjct 397696 AAGAACTCTAGAAATAAAAAATCTCTCGTTTTCGTTCATTCTGTTGTTCCAGTCATGAAT 397637 Query 19446 ATCTTTAGATAAATCTACTTCTTCAACTGTCCAAAAAGAAGCCTCTGCTTTTTTATACAT 19505 ||| ||||| ||||| | ||||||| | ||||| ||||| || || || ||||| Sbjct 397636 ATCCTTAGACAAATCAATTTCTTCAGCGGTCCAGAAAGAGGCTTCGGCACGCTTATAAGC 397577 Query 19506 GTTCCATATATCACGATATTGTATAGGAAATATAACAAATCTATTTTTATTTTCTTTAAG 19565 | ||| || ||| | || | ||||| || | |||| ||| | || | || || | Sbjct 397576 TTGCCAGATTTCATGGTACTTGATAGGGAAAAGAACAGTTCTTTCCTTGTCCTCATTCAA 397517 Query 19566 AATAGGTTCC 19575 | ||||||| Sbjct 397516 CAAAGGTTCC 397507 >seq9 Length=439147 Score = 212 bits (234), Expect = 7e-50 Identities = 533/809 (66%), Gaps = 3/809 (0%) Strand=Plus/Plus Query 47877 AGTGCTATAGATGCTAGATTACATACAGCTACCTCATTTGGATTAGTATATTGTATTATT 47936 || || ||||| ||||||||||| || || |||| ||| || ||| | | ||| Sbjct 235012 AGAGCAATAGAGGCTAGATTACAAACGGCAGTTTCATCTGGGGAAGAATACTCGACGATT 235071 Query 47937 TCAGCACATAGATTACCACATTTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTA 47996 ||| ||| | ||| |||| || |||||||| || || || || | | ||| Sbjct 235072 TCACAACACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCTTTCTATTA 235131 Query 47997 CATGCGTCCTTGTAAAGCATAAAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGAT 48056 |||| ||||||||||| ||| |||||||| || |||||| | || | || | ||| | Sbjct 235132 CATGAGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTAAGATTGCA 235191 Query 48057 TTCCAAACAGTCCTAGCCTTTATAACAGCTCTAGCTTTATTATCATGTTCGTATTTAGTA 48116 | ||| | | | | | ||||| | | | || | | || |||||| ||| Sbjct 235192 TACCATA-ACTTTTGGGCTTTA--ATGGTTTTACCACGACCTTCCCTTTCGTAACGGGTA 235248 Query 48117 TATAACTTCTCAAATTCATCCCCATACACATTATCTAACCCAGGACATTCATTAGGACAC 48176 |||| || ||||||||||| || | |||| |||||| || || || | ||| | Sbjct 235249 TATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCACTGGGAGAA 235308 Query 48177 ATCAATGACCAATCCTCATCATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGA 48236 | || | ||| | |||| | || || | ||||||| | || || ||||| ||| Sbjct 235309 AATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGAATCCACAGA 235368 Query 48237 GCTATAAATAAATCCCTAGTTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGA 48296 || || |||||||| | | | |||||| || ||| | || ||| || | | Sbjct 235369 GCAGGGAACAAATCCCTTGCACGGATTTCTTCTTTACCATGGGTTTTTCTAATATCGACA 235428 Query 48297 AAGTCCATTATATCAGCATGCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTA 48356 ||||| | ||||| |||||||||||||| || | | || | |||| |||| || Sbjct 235429 AAGTCGAAGATATCTGCATGCCATGGTTCCAAGAAAAGCGCAAAGGCACCAGGTCTCTTG 235488 Query 48357 TTACCTCCTTGATCTATATATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATA 48416 ||||||||||| || | ||| | ||||||||||| |||| | | ||| || | | Sbjct 235489 TTACCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAAC 235548 Query 48417 CCATTTGATATACCATTGGTTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATT 48476 ||||| || |||| || || || | |||||| || | | | || || |||| Sbjct 235549 CCATTCGAAGTACCGTTAGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 235608 Query 48477 GAAATACCTATACCACCTGCCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAA 48536 || ||| | ||||||||| | ||||| || | |||||| ||| | ||||||||| Sbjct 235609 TGAAGACCAACACCACCTGCAGTCTTAGAAATCATAGCACATTCTTTCAAAGTATCATAA 235668 Query 48537 ATTCCTTCTATACTATCATCTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGA 48596 || ||||| ||| ||||| |||| | ||| ||||| ||||||||| ||||| Sbjct 235669 ATGCCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGATGT 235728 Query 48597 CAAGTTCCTGAATTAAATAATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAAT 48656 ||| || | || ||||| ||||| || || ||| | || || | || | ||| Sbjct 235729 GGAGTACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTAACGACATCAAA 235788 Query 48657 TTATATGTTTCAATAACAGAATCTATATC 48685 || || || | | ||||| || ||||| Sbjct 235789 TTGTAGGTCTTCAGCACAGACTCGATATC 235817 >seq5 Length=1007496 Score = 203 bits (224), Expect = 4e-47 Identities = 729/1129 (65%), Gaps = 38/1129 (3%) Strand=Plus/Minus Query 47958 TTGATAGTACCCAAATTTTGATGATTATTNNNNTTGTTACATGCGTCCTTGTAAAGCATA 48017 |||||| |||||| |||| || ||| |||| || || ||||| |||| || | Sbjct 296987 TTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTGTTGCAAGCATCCTTATAAACCACA 296928 Query 48018 AAAGGTGTTCCAGTTTCTATCTGAGATTCAATGATAGATTTCCAAACAGTCCTAGCCTTT 48077 |||||||| |||||||| | || | ||| | || || | ||| | | ||| || Sbjct 296927 AAAGGTGTACCAGTTTCAGTTTGTGCTTCCAAAATGGAATACCATAATTTTTGAGCTTTA 296868 Query 48078 ATAACAGCTCT-AGCTTTATTATCATGTTCGTATTTAGTATATAACTTCTCAAATTCATC 48136 || | ||| | | | || | |||||| ||||||| ||||| || || Sbjct 296867 AT----GGTCTTACCACGACCTTCTTTTTCGTAGCGGGTATATAGAGCTTCAAAATCGTC 296812 Query 48137 CCCATACACATTATCTAAC-CCAGGACATTCATTAGGACACATCAATGACCAATCCTCAT 48195 || || ||| | || | || ||| | | | ||| | | ||| | |||| | ||| Sbjct 296811 ACCGTA-ACAGTCGCTTAGACCGGGAGCTGCTGTTGGAGAGAACAAAGTCCAAGTCCCAT 296753 Query 48196 CATTTTTTACTCTAGTCATAAATATATCTGGTATCCAAAGAGCTATAAATAAATCCCTAG 48255 | || || | |||| || | ||| || ||||| ||||| ||| ||||| || | Sbjct 296752 TTTCTTCGACACGTTTCATGAAAAGATCAGGAATCCACAGAGCAGGAAACAAATCTCTTG 296693 Query 48256 TTCTTAGTTCTTCATTGCCACTATTCCTTTTAAGTTCAAGAAAGTCCATTATATCAGCAT 48315 | | |||||| || || ||| || | | |||| ||| || | |||||||||| Sbjct 296692 CACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATCAATAAAATCAAAGATATCAGCAT 296633 Query 48316 GCCATGGTTCTAAATATATTGCCATTACACCTGGTCGTTTATTACCTCCTTGATCTATAT 48375 |||||||||| | || | || | |||| |||| ||| ||||| || || || | || Sbjct 296632 GCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCCTGGTCGACAT 296573 Query 48376 ATCTGGCAGTATTGTTATAAACTCTTAACATTGGGACAATACCATTTGATATACCATTGG 48435 | | ||| ||||| ||| |||| | | ||| || | | || || || ||||||| | Sbjct 296572 AACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAAGTACCATTTG 296513 Query 48436 TTCCCGAAATATAACTTCCACTAGCTCTTATATTACTAATTGAAATACCTATACCACCTG 48495 | || | ||| ||| ||| | | | || ||| ||| | ||| |||||||| | Sbjct 296512 TACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGAATATGTAGACCAATACCACCAG 296453 Query 48496 CCATTTTAGATATTAGAGCACACCGTTTAAGGGTATCATAAATTCCTTCTATACTATCAT 48555 | |||| || || | |||||| ||| | || || ||||| || || ||| || | Sbjct 296452 CAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCGATAGAGTCCT 296393 Query 48556 CTATCATATTTAATAGAAAACAACTAGACATTTGCGGATGACAAGTTCCTGAATTAAATA 48615 | |||| | | |||||| |||||||| || | ||| || | |||||| | Sbjct 296392 CCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCAGCATTAAACA 296333 Query 48616 ATGTTGGAGATGCATGAATAAACCATTTCTCTGATAACAATTTATATGTTTCAATAACAG 48675 | |||||||| |||||| |||| |||| || | || ||||||||||| | | ||| Sbjct 296332 AAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACATTAAGTTATATGTTTCTAGAGCAG 296273 Query 48676 AATCTATATCCCATTGATGTATACCTATAGATACACGCATTAACATATATTGAGGTCTTT 48735 || || || | || || || | | || | ||| | | | ||| || | || Sbjct 296272 CTTCGATGTCTCTACCGTGGATGCCCAGTGCGACTCTCATAATTAAGTGTTGTGGACGTT 296213 Query 48736 CAACAATTTTGTTATTTATTTTCAAAAGATATGATTTTTCCAATGTTTTAAAACCAAAAT 48795 | | | || || ||| | | | ||| || |||||| |||||||||||||||| Sbjct 296212 CGGCCACTTGACCGTTGATTCTTAGTAAATAAGAACGTTCCAAAGTTTTAAAACCAAAAT 296153 Query 48796 AGTTGTA-TGAAAAGTCGTTATCATTAATAATTGATGAATTTATTCTTTCCTTATGTT-T 48853 | |||| || ||| || | |||| | ||||| || |||| | | || |||| || Sbjct 296152 AACTGTACTGGAAA-TCTCTGTCATAGACAATTGCAGAGTTTAATTTATCTTTATTTTCC 296094 Query 48854 AT----ATACTACATCCATT-----ACATTTTTTGA-------TA----TA-----ATTG 48888 || ||||| | |||| | || | || || || ||| Sbjct 296093 ATGACAATACTGTAGACATTGTCAGAGATCATGGGAGCGGGCTTACCAGTAGCAGCGTTG 296034 Query 48889 A-TTCCTTGTAAAGATCTTCTACAACATCACTAAATAttttttttGTTTCTTTATGAAGA 48947 | | | ||||||||||| ||||| | | |||| |||| | |||| |||||| | | Sbjct 296033 ACATATCTATAAAGATCTTCGACAACTTTAGAAAATTGTTTTGTAGTTTGTTTATGTAAA 295974 Query 48948 TTAGATATAGATATTCTAGCAGCTAATATAGCATAATCTGGATGAATTGTTGTACATGTA 49007 ||||| || | |||||||||||||| |||| ||||||||||||| || || |||||| Sbjct 295973 TTAGAAATGGCAATTCTAGCAGCTAAGGTAGCGTAATCTGGATGAACAGTGGT-CATGTA 295915 Query 49008 C-TAGATATTTCTGCTGCTAATATATCTAATTCTTTAGTAGTTACACCT 49055 | | || ||||||| ||||| | |||| ||| | || || |||||| Sbjct 295914 CGCACATGTTTCTGCGGCTAAGTTGTCTAGTTCGATTGTTGTGACACCT 295866 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 562108680551880