Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_020845.1 Length=180977 Score E Sequences producing significant alignments: (Bits) Value seq5 123 3e-23 >seq5 Length=1007496 Score = 123 bits (136), Expect = 3e-23 Identities = 329/494 (67%), Gaps = 24/494 (5%) Strand=Plus/Minus Query 138204 GGACCTCCACCTCCATGTGGAATACAGAATGTCTTATGTAAATTTAGATGACATACATCT 138263 ||||| || || ||||| || || | |||||||| || ||||| | || || |||||| Sbjct 710920 GGACCACCGCCACCATGAGGGATGGAAAATGTCTTGTGCAAATTCAAGTGGCAGACATCT 710861 Query 138264 GCACCATAGTCACATGGTTTTGCTAGACCTACCTGTGCATTTAGATTTGCACCATCGAGA 138323 |||||| || | |||| | || || ||||| || || | ||| |||||||| | | Sbjct 710860 GCACCAAGATCTCCTGGTGAAGTTAACCCAACCTGCGCGTTCATATTAGCACCATCCAAA 710801 Query 138324 TATACCTGACCACCATTGTCATGAACGATCTTACATATC-TGTCTGATGTTTGTTTCAAA 138382 ||||| || |||||| | ||| ||||| | | ||| | ||| |||| || |||||| Sbjct 710800 TATACTTGCCCACCAAAATAATGCACGATATCA-ATAGCATGTTGGATGCCTGGTTCAAA 710742 Query 138383 TACACCATGAGTCGATGGATATGTAATCATAATACATGAG--AGTTC----AAATG-TAT 138435 || ||||| ||| || ||||| || ||||| ||| || ||||| |||| | | Sbjct 710741 TAAACCATAAGTAGAAGGATAGGTGATCAT--TACGGCAGCTAGTTCTTTAGAATGCTTT 710684 Query 138436 TCATGATTGCTTTCT---TC-TCTAGATCTTTGATGTCTATGTTGCCATCATCATCACAC 138491 ||| ||| ||| | || | ||||| | | | ||||| | ||| Sbjct 710683 TCAGCCTTGGTTTTTAAGTCAACCAGATC--------CAAAG-AACCATCCTGTAAACAG 710633 Query 138492 TTGACACCTACAACTTTCATTCCTGCCATGACTGCACTAGCAGGATTAGTTCCATGTGCT 138551 |||||| |||||||||| || |||||| | ||| ||| ||||| || ||||| || Sbjct 710632 TTGACAGGAACAACTTTCAAACCCGCCATGGCAGCAGAAGCTGGATTTGTGCCATGAGCA 710573 Query 138552 GACTCTGGTATCAGACATACATTTCTTTTATCATCTCCTGATCCTTGATGATATGCTTGG 138611 || | || || | |||||| || | | | || || | || || | | | Sbjct 710572 GAAACGGGGATTAAACATACGTTACGGTGACTTTCACCCTTGCTTTCCAAGTAAGATCTG 710513 Query 138612 ATTGCTAACAGTCCTGCATACTCACCCTGTGATCCTGCGTTAGGTTGTAATGATATAGAA 138671 ||| || || || | || ||||| |||| |||| ||||||||||| || ||| | Sbjct 710512 ATTACTCTCAAACCGGTGTATTCACCTTGTGCACCTGAATTAGGTTGTAAAGAAATACCA 710453 Query 138672 TCAAAACCTGTGAT 138685 || |||||||| || Sbjct 710452 TCGAAACCTGTAAT 710439 Score = 107 bits (118), Expect = 2e-18 Identities = 161/229 (70%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 139854 AACAGCATTGCCTCTGCTGCTGCAGTTGCTTCATCTAATAGAGATGCGTTTGCTATTGGT 139913 || ||||| ||||| | |||||||| ||||||| || | || ||||| || | || Sbjct 709219 AATAGCATAGCCTCACCAGCTGCAGTACCTTCATCCAACAATGAGGCGTTGGCCACAGGC 709160 Query 139914 AATCCTGTAAGTTCTGTGATGAGCGTTTGGTAATTGAATAAAGCTTCCAATCTTCCCTGA 139973 || || || | |||| | || ||||| |||| |||| ||||| | || || || Sbjct 709159 AAACCGGTCAAATCTGAAACGACTGTTTGAAAATTCAATAGCGCTTCAAGCCTACCTTGT 709100 Query 139974 GATATCTCAGCTTGATAGGGAGTGTAAGATGTGTACCAACTAGGATTCTCAAGAACGTTT 140033 ||||| |||| ||||||||||| ||||| || ||||| |||| | || | | |||| Sbjct 709099 GATATTTCAGGCTGATAGGGAGTATAAGAAGTATACCATTCAGGACTTTCCAACAGGTTT 709040 Query 140034 CGCTGTATGACTGGGGGTGTAATGGTTCCATAGTATCCTTGACCTATAA 140082 | || || ||||| ||| ||| || || || || || | ||| |||| Sbjct 709039 CTTTGAATAACTGGTGGTAAAATCGTACCGTAATAACCCTTACCGATAA 708991 Score = 84.2 bits (92), Expect = 3e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 139311 AGTGCTTGTGCTGTGCAGATGTTACTGGTTGCTTTGTCTCTTCTAATATGCTGCTCTCTA 139370 || ||||| || || || || || ||||| || || | | || || ||||||||| Sbjct 709783 AGAGCTTGAGCGGTACAAATATTTGAAGTTGCCTTATCACGCTTGATGTGTTGCTCTCTA 709724 Query 139371 GTTTGTAGTGCTAATCTGTATGCAGGATTGCCTTCGCTGTCCACTGACTGACCTACAATT 139430 ||||| || || || | | || | || ||| || ||| ||| || |||||| Sbjct 709723 GTTTGGAGGGCCAAACGCAAGGCCGTTTTCCCTAAGCGGTCTTTAGACACGCCGACAATT 709664 Query 139431 CTGCCAGGTATCTTTCTCTTATACTTGTCTGTTGTTGCAAAGAATGCAGCATGAGGACCT 139490 ||||| || || ||||| || |||| || | ||||| || |||||||||||||| Sbjct 709663 CTGCCTGGAATTTTTCTATTTAACTTATCAATGACAGCAAAAAAGGCAGCATGAGGACCA 709604 Query 139491 CCGTATCCCATAGGAATACCAAACCTTTG 139519 || || ||||| || | |||||| | ||| Sbjct 709603 CCATAACCCATTGGGACACCAAATCGTTG 709575 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 578998276962840