Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 156 1e-32 seq9 149 2e-30 seq4 100 8e-16 seq15 84.2 6e-11 >seq5 Length=1007496 Score = 156 bits (172), Expect = 1e-32 Identities = 243/347 (70%), Gaps = 3/347 (1%) Strand=Plus/Minus Query 156012 ATATCAGGATGGTGTGGCTCCAGATACATAGCAAAACTACCATTCCTCTTG---CCACCC 156068 ||||||| ||| ||| ||||| |||| |||||| |||| || ||| |||||| Sbjct 296642 ATATCAGCATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCTTTTGTTACCACCC 296583 Query 156069 TGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATACCATTGGAA 156128 || || ||||| || || || ||||| || |||| | ||| ||||| | || || ||| Sbjct 296582 TGGTCGACATAACGGGCGGTATTATTAAAAACACGAATCATGGGAATTAACCCGTTAGAA 296523 Query 156129 GTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATATGTAGTCCA 156188 || ||||| || || ||| | ||||||| ||| |||| |||||||||||||| ||| Sbjct 296522 GTACCATTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTATGAATATGTAGACCA 296463 Query 156189 ATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAAATACCTTCA 156248 |||||||| | ||| ||||| ||| ||||| || | ||| | | ||||||| || Sbjct 296462 ATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGTCGTAAATACCCTCG 296403 Query 156249 ATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGTGGTGTTCCA 156308 ||||| || || | ||| | | | | || || | ||||||| ||| || ||| Sbjct 296402 ATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAGGTTTTGGAGTACCA 296343 Query 156309 GCGTTGAATAGTGTAGGTGTTGCATGAATAAAATACTTATTAGACAT 156355 || || || | || || | |||||| |||| || || |||||| Sbjct 296342 GCATTAAACAAAGTTGGAGAGGCATGAGTAAAGTATTTTAGAGACAT 296296 Score = 122 bits (134), Expect = 3e-22 Identities = 254/378 (67%), Gaps = 3/378 (1%) Strand=Plus/Plus Query 288849 CCTATCAAACCTACCAGAACGAGTTAATGCTGGGTCTAATATATCGGCTCTGTTTGTTGC 288908 ||| ||||| ||||||| | ||||||| || | ||||||| ||| || || | Sbjct 516202 CCTGTCAAATCTACCAGGCCTTAATAATGCTTTATCGAGAATATCGGGTCTATTGGTACC 516261 Query 288909 TGCCAATACAACAATAGATTCGGTTTGCTTAAATCCATCCATACTTGTTAAAATTTGATT 288968 || || ||||||| | || | | | |||| |||||||| | ||| |||||||| Sbjct 516262 AGCTAAGACAACAACATGGTCAGCTGGAGTAAAACCATCCATTTCTACTAACATTTGATT 516321 Query 288969 AAGTGTTTGTTCCCTTTCATCATTTGAACCTCTTGAATCACCCGAATCGCTCCttttttt 289028 || || | || || ||||| || | |||| ||| |||| | ||| ||| Sbjct 516322 CAGCGTGTTCTCTCTCTCATCGTTAGCACCTGAAAAATTACCCTTTTG---CCTAGCTTT 516378 Query 289029 ACCAACAGCATCAATTTCGTCAATGAAAATCACACACGGAGAATTTTGTCTCGCAATTGC 289088 || | ||||||||| |||||||| || | | | || | ||||| ||| ||| | Sbjct 516379 CCCTATAGCATCAATCTCGTCAATAAACACAATCGAAGGTGCATTTTCTCTTGCAGTCTT 516438 Query 289089 AAATAATTCTCTTACACGGGATGCTCCAAGACCAACATACATTTCTACAAATTCAGAAGC 289148 |||||| |||||||| | | || |||| ||||||| |||||||||||||||| ||| | Sbjct 516439 AAATAAATCTCTTACTCTTGCAGCACCAACACCAACAAACATTTCTACAAATTCTGAACC 516498 Query 289149 GGATACTTGAATGAATGTTACATTTGCTTCGCCTGCTACTGCCCTCGCCAGAAGTGTCTT 289208 || || | || | || ||||| ||||| ||| | || || || ||||| Sbjct 516499 AGAAACAAAATAAAACGGGACGCCGGCTTCACCTGCAGTCGCCTTTGCAAGTAGGGTCTT 516558 Query 289209 ACCTGTTCCAGGTGGTCC 289226 ||| || || || || || Sbjct 516559 ACCGGTACCTGGAGGACC 516576 >seq9 Length=439147 Score = 149 bits (164), Expect = 2e-30 Identities = 221/311 (71%), Gaps = 2/311 (1%) Strand=Plus/Plus Query 156060 TTGCCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACCTAGCATAGGAATAATA 156119 || || || || || ||||| |||||||| || ||||| |||| | ||||||||| | Sbjct 235489 TTACCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAATCATAGGAATCAAC 235548 Query 156120 CCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGAGCGAACATTATGAATA 156179 ||||| ||||| || || || ||| |||| ||||| | || || | || | |||| Sbjct 235549 CCATTCGAAGTACCGTTAGTACCGGCGATATAAGAACCTGTGGAACGGATGTTGTTAATA 235608 Query 156180 TGTAGTCCAATACCACCTGACCATTTAGAAATTTGAGCGCATTCCTTTACAGTATTGAAA 156239 || || |||| |||||||| |||||||| ||| ||||| || | ||||| || Sbjct 235609 TGAAGACCAACACCACCTGCAGTCTTAGAAATCATAGCACATTCTTTCAAAGTATCATAA 235668 Query 156240 ATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACGAACTTAATTGAGGTCGT 156299 || ||||||||||| ||||| | ||| | | ||| | || ||| | ||| || || Sbjct 235669 ATGCCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGACATTTGGGGATGT 235728 Query 156300 GGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAATA-CTTATTAGACATATA 156358 || || ||||||||||||| || || | || ||| | ||||| |||| ||||| | Sbjct 235729 GGAGTACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAAATATCTTA-ACGACATCAA 235787 Query 156359 ATCGTATGTCT 156369 || ||| |||| Sbjct 235788 ATTGTAGGTCT 235798 >seq4 Length=1513677 Score = 100 bits (110), Expect = 8e-16 Identities = 134/186 (72%), Gaps = 3/186 (2%) Strand=Plus/Plus Query 301767 TAAATAAATAGTACAGGATGGATTCTTTGTGTTTTCCGATAGAGACAGAATTTCTTCAAT 301826 ||| |||| ||| |||| ||| | || |||||| | | | || |||||||| | Sbjct 216334 TAAGTAAACAGTCAAGGAAGGAGTTTTCATGTTTTTGGCCACATTCAAAATTTCTTTTAA 216393 Query 301827 ACGGGGAACACCACGGGTTACGTTAGACTTGGACGCAACACCAGCAAAGTGGAAAGTATT 301886 ||||||||||||| || || || |||||| |||||||||||||| ||||| ||||| Sbjct 216394 ACGGGGAACACCAGAAGTAACTTT---CTTGGAAGCAACACCAGCAAAATGGAAGGTATT 216450 Query 301887 CAGAGTTAATTGAGTAGTTGGCTCACCAATACTTTGTGCCGCAATCATACCAACCATTTC 301946 || || | || || | || |||||||| ||| || || | | |||||||||||| Sbjct 216451 TAGTGTCATCTGTGTGGCCGGTTCACCAATGGATTGGGCTGCTAGAACACCAACCATTTC 216510 Query 301947 TCCTGG 301952 || || Sbjct 216511 ACCAGG 216516 Score = 98.7 bits (108), Expect = 3e-15 Identities = 107/142 (75%), Gaps = 0/142 (0%) Strand=Plus/Plus Query 302539 TTTCTTACGGTCATATCATAACCAATCATAATGTCTTCCATACTCTTGATTAAACGACGC 302598 |||||| || |||| ||| | ||| || ||||| | | || | ||||||||| Sbjct 217121 TTTCTTGTAGTGTTATCGTAATGGACCATGATATCTTCTAGAGCTTTCACTAAACGACGT 217180 Query 302599 TGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGACCACCC 302658 ||||||||||| ||| || |||||| || || ||||| || ||||| ||||||||||| Sbjct 217181 TGAATATAACCTGTTTCAGCTGTTTTAACGGCGGTATCGATAAGACCTTCACGACCACCC 217240 Query 302659 ATAGCATGGAAGAATAGCTCTT 302680 || || |||||||| | ||||| Sbjct 217241 ATTGCGTGGAAGAAAAACTCTT 217262 >seq15 Length=1052871 Score = 84.2 bits (92), Expect = 6e-11 Identities = 332/511 (65%), Gaps = 16/511 (3%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 ||||| || | ||||||||| ||||| ||||| |||||||| | |||||||| || | Sbjct 579276 GCACCATGAGCAATCATACAGTCACGTTCCATCTCACCGAATCTTAGACCACCGTCTCTT 579335 Query 251545 GCCCTACCCTCGGCAGGCTGACGAGTGAGATTAAC---CATAGGACCGATGGAGCGGCTA 251601 | |||||||| | ||||| | || | || || ||| ||||| | | | | Sbjct 579336 GATCTACCCTCTACTGGCTGTCTTGTCA-AT--ACTTGCATTGGACCACGTGCTCTGGCA 579392 Query 251602 TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAAGATG 251661 || ||| |||| |||||||| | | || || || ||| |||||| | ||| || Sbjct 579393 TGGATCTTGTCATCCACCATATGTCTTAATCGTTGATAATATGTGGGACCAAAGAAAATT 579452 Query 251662 CTCGAAGGCATTTGCTCT---CCAGTTAGAGCGTTATACATAACTTCGTTTCCATTAGAT 251718 | | | |||| ||| | || || || |||||||||||||||| ||| |||| Sbjct 579453 -TGG--GCCATTAGCTTTTTACCGGTGTGACCGTTATACATAACTTCAAACCCACGAGAT 579509 Query 251719 TCATAACCAAGTTTCTGTAGCTCTGAAGCAATATCACCAATCTTGAATTTGC-TAAAACT 251777 | ||||||| | | | || | || ||| | | | || ||| | | ||| Sbjct 579510 TGATAACCATGCTCGCGCAGTAGTTTAGATATACCTTCTA-CTGTAATGTCTGTGAAAGG 579568 Query 251778 GGTGCCGTCTCCGTAAAGACCCATTTGAATCAACACTTTGCCTAAAAGTGTCTCTTTCAG 251837 | | | || || | | ||| | | | ||||| | || | || | | Sbjct 579569 AGAGGCATCACCTTCATTACCGGATAGTGCCGCGACTTTACTCAACAAACATTCAATTAA 579628 Query 251838 TTGGGCGATAGTCATACGACTGGGAATAGCATGGGGATTGATGATGATGTCGGGTTTCAG 251897 ||||| | |||||||||| |||||||| || ||||||||||| | || || | Sbjct 579629 ATGGGCAACAGTCATACGAGATGGAATAGCGTGAGGATTGATGATTAAATCCGGAACAAT 579688 Query 251898 TCCATCAGCAGTGAAGGGCATATCCTTTTCCTCAATA-ATGTTTCCAATAGTTCCCTTTT 251956 || || || || || ||||||| ||| || | ||| || | |||||||| ||||||| Sbjct 579689 ACCTTCTGCTGTAAATGGCATAT-CTTCTCTACGATATGTGATACCAATAGTACCCTTTT 579747 Query 251957 GTCCGTGACGAGAACTGAACTTATCACCAAT 251987 | || |||||||| || || |||||||| Sbjct 579748 GACCATGACGAGAGGCAAATTTGTCACCAAT 579778 Score = 84.2 bits (92), Expect = 6e-11 Identities = 106/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 233272 AGCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATT 233331 |||||| | ||||| | |||||| | |||||| ||||| | | |||||||||||| | Sbjct 689706 AGCACCATAGGCAATTACACAATCTCTTTCCATCTCACCCAACCTCAGACCACCATCCCT 689765 Query 233332 TGACCTACCCTGGACTGTTTGACGAGTTAAAACAGTTCTTGGACCCTGAGCACGATAATT 233391 || ||||| | | |||||| || ||||||| ||||| || |||| | || Sbjct 689766 GGATCTACCTTCAGTAGGTTGACGTGTCAAAACAGCCCTTGGGCCACGAGCTCTTGCATG 689825 Query 233392 AATTTTATCTTTAACCATATGCTTCA 233417 || |||||| |||||||||||||| Sbjct 689826 CATCTTATCTAAAACCATATGCTTCA 689851 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817279419729