Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_024697.1 Length=370920 Score E Sequences producing significant alignments: (Bits) Value seq5 156 1e-32 seq9 149 1e-30 seq4 129 1e-24 seq10 107 5e-18 >seq5 Length=1007496 Score = 156 bits (172), Expect = 1e-32 Identities = 560/865 (65%), Gaps = 18/865 (2%) Strand=Plus/Plus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 ||||||||||| |||||| | |||||| |||||||||| | |||| || | | Sbjct 296152 TATTTTGGTTTTAAAACTTTGGAACGTTCTTATTTACTAAGAATCAACGGTCAAGTGGCC 296211 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 |||||||| |||||| | || | | || || | || || || || || || || Sbjct 296212 GAACGTCCACAACACTTAATTATGAGAGTCGCACTGGGCATCCACGGTAGAGACATCGAA 296271 Query 110424 GCTGTTATTGAATGTTATGATGTATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTACC 110483 |||| | | ||| ||| | || | | ||| | || |||||| |||| || Sbjct 296272 GCTGCTCTAGAAACATATAACTTAATGTCTCTAAAATACTTTACTCATGCCTCTCCAACT 296331 Query 110484 CTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTC-TAGGAATTAA 110542 | ||||| || || ||| | ||| || | ||||| |||||| | | || || Sbjct 296332 TTGTTTAATGCTGGTACTCCAAAACCTCAAATGTCCTCTTG-TTTCTTGGTCGCCATGAA 296390 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 || || ||||| || |||||||| || || | |||||| |||| | ||||| |||| Sbjct 296391 GGAGGACTCTATCGAGGGTATTTACGACACTTTGAAAGAATGTGCTTTGATTTCCAAAAC 296450 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 |||| || |||||| | || ||||| | ||||| |||| || | | || || Sbjct 296451 TGCTGGTGGTATTGGTCTACATATTCATAACATTCGTTCAACTGGTTCTTACATTGCTGG 296510 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||| | || | |||| ||| | | || || || | || || Sbjct 296511 TACAAATGGTACTTCTAACGGGTTAATTCCCATGATTCGTGTTTTTAATAATACCGCCCG 296570 Query 110723 ATATGTGAATCAAGGTGGTAAGAGAAA---TGGCTCATTTGCTATCTATCTCGAACCTTG 110779 ||||| | || |||||||| | || ||| | |||||| | || || ||||| || Sbjct 296571 TTATGTCGACCAGGGTGGTAACAAAAGACCTGGTGCCTTTGCTCTGTACCTGGAACCATG 296630 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA- 110838 |||| | ||||| ||||| || | || | | || || || || | ||||| ||| Sbjct 296631 GCATGCTGATATCTTTGATTTTATTGATATCAGAAAGAACCACGG---TAAAGAAGAAAT 296687 Query 110839 --GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||| | ||||| ||| ||| |||||||| | ||| | |||||||||||||| | Sbjct 296688 TCGTGCAAGAGATTTGTTTCCTGCTCTGTGGATTCCTGATCTTTTCATGAAACGTGTCGA 296747 Query 110897 AGAAAATGGCATGTGGTCTCTTATGTGTCC-TCATCGTTCTCCTGGTCTATCTGA-TGTA 110954 ||||||||| | ||| || | | | ||| || | |||| |||||| || ||| Sbjct 296748 AGAAAATGGGACTTGGACTTTGTTCTCTCCAACAGC-AGCTCCCGGTCTAAGCGACTGT- 296805 Query 110955 TATGGAAAAGAGTTTGAAGACCTTTACGAAAAATATGAAAAAGAAGGCAAGTTTCGCAAA 111014 || || | || ||||||| || || || ||||||||||| | | || Sbjct 296806 TACGGTGACGATTTTGAAGCTCTATATACCCGCTACGAAAAAGAAGG---TCGTGGTAAG 296862 Query 111015 CAAATTCCAGCTCAAGAACTTTGGTTCAAAATCCTTGAATCACAAGTTGAAACTGGAACT 111074 ||| ||||||| || | |||| || | ||| ||||| ||||||||| || Sbjct 296863 ACCATTAAAGCTCAAAAATTATGGTATTCCATTTTGGAAGCACAAACTGAAACTGGTACA 296922 Query 111075 CCTTATATTTTGTATAAAGATCATATTAATCGCAAATCTAATCAAATGAATTTAGGAACA 111134 |||| | | | ||||| ||| | || | || ||||| |||| || || || Sbjct 296923 CCTTTTGTGGTTTATAAGGATGCTTGCAACAGAAAGTCTAACCAAAAAAACTTGGGTGTT 296982 Query 111135 ATTAAGTCTAGTAATTTGTGCTGTG 111159 || ||||| || || ||||||| Sbjct 296983 ATCAAGTCATCGAACTTATGCTGTG 297007 >seq9 Length=439147 Score = 149 bits (164), Expect = 1e-30 Identities = 401/609 (66%), Gaps = 11/609 (2%) Strand=Plus/Minus Query 110304 TATTTTGGTTTCAAAACTCTTGAACGTGCTTATTTACTTCGTGTCAATGGCGAGATCATT 110363 |||||||| ||||| ||| | || ||| | ||||| || | | || || || | Sbjct 235928 TATTTTGGGTTCAAGACTTTGGAGCGTTCGTATTTGCTAAGATTGAACGGTGAAGTGGCA 235869 Query 110364 GAACGTCCTCAACACATGTTTCTTCGTGTTGCGATTGGTATTCATGGACATGATATTAAA 110423 ||||| || || ||| || || | ||||| ||| | ||||| || || |||||| | Sbjct 235868 GAACGGCCACAGCACTTGGTTATGCGTGTGGCGCTGGGTATCCACGGTAGTGATATCGAG 235809 Query 110424 GCTGTTATTGAATGTTATGATGT-ATTAAGTAAAAAGAAAGCTATTCATGCTACTCCTAC 110482 |||| | | || || | || || || | | | | ||| ||| | || || Sbjct 235808 TCTGTGCTGAAGACCTACAATTTGATGTCGTTAAGATATTTC-ACTCACGCTTCCCCAAC 235750 Query 110483 CCTATTTAACGCAGGAACTAATGGAGGACAATTGGCTTCTTGCTTTCTTCTAGGAATTAA 110542 | |||| ||||| || ||| ||| || |||| || || || | | || || Sbjct 235749 CTTATTCAACGCTGGTACTCCACATCCCCAAATGTCTTCATGTTTCCTAATTGCCATGAA 235690 Query 110543 CGATGATTCTATTGAAGGTATTTATGATGCTCTTAAAGAAACTGCTCTTATTTCTAAAAA 110602 ||||| ||||||||||| ||||||||| || | |||||| |||| | |||||||| | Sbjct 235689 GGATGACTCTATTGAAGGCATTTATGATACTTTGAAAGAATGTGCTATGATTTCTAAGAC 235630 Query 110603 CTCTGGAGGAATTGGTATTCACGTTCATGATATTCGCTCAAAAGGAGCAAATATCGCAAC 110662 | || || ||||| |||| || | | || || || | ||| | ||||||| Sbjct 235629 TGCAGGTGGTGTTGGTCTTCATATTAACAACATCCGTTCCACAGGTTCTTATATCGCCGG 235570 Query 110663 AGCGAAGGGTGCTTCAACTGGACTTGTTCCAATGTTAAGAGTCTTCAACGACACTGCAAA 110722 | || ||| |||| | ||| | |||| ||| | | || |||||| | ||||| Sbjct 235569 TACTAACGGTACTTCGAATGGGTTGATTCCTATGATTCGTGTTTTCAACAATACTGCTCG 235510 Query 110723 ATATGTGAATCAAGGTGGT---AAGAGAAATGGCTCATTTGCTATCTATCTCGAACCTTG 110779 |||||| | ||||| ||| |||||| ||| | ||||| | | | ||||| || Sbjct 235509 TTATGTGGACCAAGGAGGTAACAAGAGACCTGGTGCCTTTGCGCTTTTCTTGGAACCATG 235450 Query 110780 GCATTCAGATATATTTGAATTCTTAGAACTTCGTAAAAATCAAGGATTTGAAGAACAAA- 110838 |||| ||||||| || || || | || || | |||| || || | ||||| ||| Sbjct 235449 GCATGCAGATATCTTCGACTTTGTCGATATTAGAAAAACCCATGG---TAAAGAAGAAAT 235393 Query 110839 --GAGCACGTGATTTATTTTATGCAATGTGGATTTCAGATTTATTCATGAAACGTGTTCA 110896 | ||| | ||||| || ||| |||||||| | || | || |||||||||||||| Sbjct 235392 CCGTGCAAGGGATTTGTTCCCTGCTCTGTGGATTCCTGACCTTTTTATGAAACGTGTTCA 235333 Query 110897 AGAAAATGG 110905 ||| |||| Sbjct 235332 AGAGGATGG 235324 >seq4 Length=1513677 Score = 129 bits (142), Expect = 1e-24 Identities = 156/210 (74%), Gaps = 2/210 (1%) Strand=Plus/Minus Query 305318 GACAATGATTGGGTTCTGTTCAATAGGCAACCATCACTGCATAAAATGTCTATGATGGCT 305377 || |||||| ||||||||||| | ||||| ||| ||||||||||||||||||||||| Sbjct 218382 GATAATGATCCAGTTCTGTTCAACCGTCAACCCTCATTGCATAAAATGTCTATGATGGCT 218323 Query 305378 CATAAAGTCAAAGTATTATCTGGATT-GACATTTCGATTAAATGTAAGTGCTTGTACGCC 305436 || | ||| ||||| | || | ||| |||||| |||| ||| | || | | || Sbjct 218322 CACAGAGTGAAAGT-TATTCCGTATTCCACATTTAGATTGAATTTGTCTGTTACATCTCC 218264 Query 305437 TTATAATGCGGATTTTGATGGAGATGAAATGAATATGCATGTACCTCAATCAAAGGTTAC 305496 |||||||| ||||| || || || ||||||||| | || |||||||| || ||| || Sbjct 218263 ATATAATGCCGATTTCGACGGTGACGAAATGAATCTTCACGTACCTCAGTCCGAGGAAAC 218204 Query 305497 AATGACTGAATTATCAGAAATATGTTCTGT 305526 || | | ||| | || || ||||| |||| Sbjct 218203 AAGGGCAGAACTGTCCCAATTATGTGCTGT 218174 Score = 91.5 bits (100), Expect = 3e-13 Identities = 123/167 (74%), Gaps = 6/167 (4%) Strand=Plus/Minus Query 304886 TTACAATATCATATTGCAACATTAATGGATAATGAAATTGCTGG--AATTATGCAGGCAT 304943 ||||||| |||| |||| || | ||||||||||| |||||||| || | ||||| | Sbjct 218808 TTACAATTTCATGTTGCCACTTATATGGATAATGATATTGCTGGCCAACCA--CAGGC-T 218752 Query 304944 CT-CAAAGATCTGGCAGACCTTTAAAGGGTATTAGGCAACGCATTAAAGGTAAAGAGGGT 305002 || |||| || || | || |||| |||| | || | || |||||||||||| Sbjct 218751 CTACAAAAGTCCGGTCGTCCCGTAAAATCTATTCGTGCTCGTTTGAAGGGTAAAGAGGGT 218692 Query 305003 CGTATTCGAGGTAATCTAATGGGAAAACGTGTTGATTTTAGTGCAAG 305049 ||||| | |||||| ||||||| || |||||||||||| ||||| Sbjct 218691 CGTATCAGGGGTAATTTAATGGGTAAGCGTGTTGATTTTTCAGCAAG 218645 >seq10 Length=750185 Score = 107 bits (118), Expect = 5e-18 Identities = 344/528 (65%), Gaps = 17/528 (3%) Strand=Plus/Plus Query 131489 TTCTGGACTGTTGAAGAGATCGATATGACCAAAGATATTGATGATTGGGAAAAATTAACC 131548 |||||||| | |||||| || ||| || | || |||||| |||| ||| | || || Sbjct 397601 TTCTGGACCGCTGAAGAAATTGATTTGTCTAAGGATATTCATGACTGGAACAACAGAA-- 397658 Query 131549 TTGAATGAAAAAGA------TTTTGTTTCCAAAGTTCTTGCATTCTTCGCCGGAAGTGAT 131602 |||| ||||| || |||| |||| | ||||||||| || ||||||| ||| Sbjct 397659 -TGAACGAAAACGAGAGATTTTTTATTTCTAGAGTTCTTGCCTTTTTCGCCGCTTCTGAC 397717 Query 131603 GGCATTGTTATTGAAAATCTTGTTATTAATTTCATTCAAGAAATTGATATTCCTGAAGTA 131662 || ||||||| |||||| | ||| || ||| | ||| || | ||||| || | | Sbjct 397718 GGTATTGTTAATGAAAACTTGGTTGAAAACTTCTCTACCGAAGTTCAAATTCCAGAGGCA 397777 Query 131663 ACATCGTTCTACACATTTCAAGCCGCTG-TTGAATCTATTCATAGCGAGATGTATTCATT 131721 | ||||| |||| || || ||||| ||||||| || | || || || Sbjct 397778 AAGAGTTTCTATGG-TTTCCAGATCATGATTGAAAATATTCATTCTGAAACTTACTCCTT 397836 Query 131722 ATTGATTGAGAGTCTTGTTAAAAATGAAGATGATAAAAATAAATTATTTG---ATGCTGT 131778 |||||| || | || |||| || | | ||| | |||| || |||| | Sbjct 397837 ATTGATCGATAC-CTACATAAAG--GACCCTAAGGAAAGTGAATTCTTGTTCAATGCCAT 397893 Query 131779 AAATAAATTTCCTGCAATTAAAAAGAAAGCAGAATGGGCTATTAAATGGATTCAAGATGA 131838 | | | || | ||| |||| || || |||||| | | |||||||||||| | Sbjct 397894 TCACACCATCCCAGAAATCGGTGAGAAGGCCGAGTGGGCTCTAAGATGGATTCAAGACGC 397953 Query 131839 TTCCGCTAATTTTTCTACAAGACTTGTAGCTTTTGCTTGTGTTGAAGGTATATTCTTTTC 131898 | ||| ||| | |||||| || || ||||| | | | |||||| | ||||| || Sbjct 397954 TGACGCCTTGTTTGGTGAAAGACTAGTCGCCTTTGCCTCTATCGAAGGTGTCTTCTTCTC 398013 Query 131899 AGGTGCTTTCTGTGCTATCTTTTGGCTTAAGAAGCGTGGATTGATGCCTGGACTCTCATT 131958 ||| | ||| | | || || ||| | |||||| | || ||||||| || | | || Sbjct 398014 CGGTTCCTTCGCTTCCATTTTCTGGTTGAAGAAGAGAGGTATGATGCCCGGTTTGACCTT 398073 Query 131959 GTCCAATCAATTCATCTCGAGAGATGAAGCATTGCATACTGAATTTGC 132006 || || |||| || | ||||| |||| ||||| || || ||||| Sbjct 398074 CTCTAACGAATTGATTTGCAGAGACGAAGGTTTGCACACCGACTTTGC 398121 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1186812541497337