Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq5 324 2e-83 seq9 208 1e-48 >seq5 Length=1007496 Score = 324 bits (358), Expect = 2e-83 Identities = 911/1385 (66%), Gaps = 34/1385 (2%) Strand=Plus/Minus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTGGA 110766 ||| ||||| | ||| ||||||||| |||||||||| |||||| ||||| | ||||| Sbjct 297606 GTACATGTTAGAGGTGACTGGTTCAAAACATTCATTATAACCCAATATTTGGGATGTGGA 297547 Query 110767 GGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 || || |||||||||||||| ||||| ||| | || ||| | | | ||| | Sbjct 297546 TGCAGTAGGCATTGGTGCCATGGTCAAAGA--GTTTCTAATACCATGTTTCATGACATCT 297489 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGAGCTTGGTTTCACCTTCCCACATGTCAAACTGA 110884 | | | | | ||||| || | || | || || |||||||| || |||||| Sbjct 297488 TTCCTCAAAGTGTCCCAATCCCACATGCCGTAGGGTTTTTGGTCCCACATATCGAACTGA 297429 Query 110885 AGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAGCC 110944 || | ||||| || || |||||||| | |||||||| || | || | || ||| Sbjct 297428 AGTATACCTTGAGAAGCTGGAGAACCTTGGAAGGTTTCGTATGGGCCGTCCTTTTGAGCT 297369 Query 110945 AATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCATC 111004 |||||||| || |||| ||| || ||||| || ||||||||||| | ||| | Sbjct 297368 AATTCACAAGAAGCTTCCATGGAGGCATGATAAATTGTTTCAAAGATTTGGATATTTAGT 297309 Query 111005 TCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGACCT 111064 ||| || || |||||||| | | || ||| ||||| || || | |||| Sbjct 297308 AAACGGGCCTCTTCAGAATCAAAGGGTAAACGTAGCAACATAAAAGTGTCAGCCAAACCT 297249 Query 111065 TGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCAACGGGA 111124 ||||||||||| |||| || || |||| |||||| || ||| ||| |||| ||| Sbjct 297248 TGAACACCCAAGGCAATTGGCCTATGTCTCATATTGGATCTTCTCGCTTCTTCAATGGGG 297189 Query 111125 TAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTTCATG- 111183 || |||| | ||||| |||| ||||| ||| ||||||| || | ||||| || Sbjct 297188 TAGTAATTACGATCAATAACTCTGTTTAAATTACGAGTAACAACTTTGGCAATTTCGTGT 297129 Query 111184 AAGTTTTTCA-----TAATCAAAAGTGCGA--GTC-TCT------TCATTGACATACTTT 111229 || ||||| | ||| | |||| | ||| ||| ||| ||| || | Sbjct 297128 AATTTTTTGAAGTTGTAAGTAGAAGTTTGGCCGTCCTCTGACGTTTCAATGA---ACGCT 297072 Query 111230 GGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAA 111289 || | ||| | || ||||| || |||||||| || || ||| | ||| |||||| | | Sbjct 297071 GGCAAGGCAACGGAAGCCAAGTTACAAACAGCAGTTTCGTCCGGAGCTGAGTACTCAACA 297012 Query 111290 ATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTG 111349 ||||| |||||||| || ||| || ||||| || ||||||||| ||| || Sbjct 297011 ATTTCACAGCATAAGTTCGATGACTTGATAACACCCAAGTTTTTTTGGTTAGACTTTCTG 296952 Query 111350 TTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATA 111409 ||||| |||||||| || | || | || || || || || || |||| || | ||| Sbjct 296951 TTGCAAGCATCCTTATAAACCACAAAAGGTGTACCAGTTTCAGTTTGTGCTTCCAAAATG 296892 Query 111410 GCCTTCCAAACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTT 111469 | | ||| | | ||| ||||| || | || || || ||||| Sbjct 296891 GAATACCATAATTTTTGAGCTTT---AATGGTCTTACCACGACCTTCTTTTTCGTAGCGG 296835 Query 111470 GTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCT-TGTCTGG 111528 || || || |||||||| || ||||| |||| ||||| || || ||| ||| Sbjct 296834 GTATATAGAGCTTCAAAATCGTCACCGTAACAGTCGCTTAGACCGGGAGCTGCTGT-TGG 296776 Query 111529 ACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCA 111588 | |||| | || ||| ||| ||| || || || ||||||||||| || |||||||| Sbjct 296775 AGAGAACAAAGTCCAAGTCCCATTTTCTTCGACACGTTTCATGAAAAGATCAGGAATCCA 296716 Query 111589 CAGGGATGAAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTC 111648 ||| | | ||| | |||||| ||| ||||| | ||| ||||| || | || Sbjct 296715 CAGAGCAGGAAACAAATCTCTTGCACGAATTTCTTCTTTACCGTGGTTCTTTCTGATATC 296656 Query 111649 AAGGAACTCCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CT 111704 || || || | |||||| || |||||||| || || || | || | | || || Sbjct 296655 AATAAAATCAAAGATATCAGCATGCCATGGTTCCAGGTACAGAGCAAAGGCACCAGGTCT 296596 Query 111705 TTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAA 111764 || | || | | || | ||||| || || || ||||| || |||| ||| |||| Sbjct 296595 TTTGTTACC-ACCCTGGTCGACATAACGGGCGGTATTATTAAAAACACGAATCATGGGAA 296537 Query 111765 TAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCAT 111824 | | || | || ||||||||| || ||| ||| | | | | | | || Sbjct 296536 TTAACCCGTTAGAAGTACCATTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTAT 296477 Query 111825 GGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTC 111884 | || || | |||||||| ||||| || || || ||||| || | | ||| Sbjct 296476 GAATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCTTTCAAAGTGT 296417 Query 111885 CATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCG 111944 | || ||||| | ||| ||||||||||| |||||| | ||| ||| |||||| || | Sbjct 296416 CGTAAATACCCTCGATAGAGTCCTCCTTCATGGCGACCAAGAAACAAGAGGACATTTGAG 296357 Query 111945 GTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTGG-GAC 112003 || |||| ||||||||||| || | ||||| | || ||| | || || || | ||| Sbjct 296356 GTTTTGGAGTACCAGCATTAAACAAAGTTGGAGAGGCATGAGTAAAG-TATTTTAGAGAC 296298 Query 112004 ATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACC 112063 || || ||||| || | ||| || |||||| ||||||||||| | |||||| Sbjct 296297 ATTAAGTTATATGTTTCTAGAGCAGCTTCGATGTCTCTACCGTGGATGCCCAGTGCGACT 296238 Query 112064 CGCAT 112068 | ||| Sbjct 296237 CTCAT 296233 >seq9 Length=439147 Score = 208 bits (230), Expect = 1e-48 Identities = 907/1408 (64%), Gaps = 50/1408 (4%) Strand=Plus/Plus Query 110707 GTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGA-TTTGTGCGGTGG 110765 ||| ||||||| || ||||||||| ||||| |||| |||||||| |||| | || | Sbjct 234474 GTACATGTTTGAAGTCACTGGTTCAAAACATTCGTTAT-ACCCAAGAATTTGAGAAGTCG 234532 Query 110766 AGGCTGTTGGCATTGGTGCCATCA--AAAGACTGTTACGAAGACCCTTCTCCTTGA---T 110820 |||| ||||||||||| ||||| ||||| ||| | | | || | | |||| | Sbjct 234533 AGGCAGTTGGCATTGGCGCCATTGTCAAAGA--GTTTCTTA-ATCCATGT--TTGACAAT 234587 Query 110821 G-CGTTCCTTGAGAACATCCCAGTCGTAGTTGAGCT--TGGTTTCACCTTCCCACATGTC 110877 | | || ||| || | ||||| || | | | | ||| || | |||| ||||||| Sbjct 234588 GTCCTTTCTTAAGGTC-TCCCAATCCCACAT-ACCAAATGGCTTAGCATTCC-ACATGTC 234644 Query 110878 AAACTGAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGC 110937 ||| || || | || | || || |||||||| || || || ||| ||||| Sbjct 234645 AAATTGTAGAATACCCTTAGAGGCTGGAGAACCTTCGAAAGTGGAATACTTACCTTCCTT 234704 Query 110938 TTCAGCCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGC 110997 || |||||||||||| || || || | || ||||| |||||||| || || | Sbjct 234705 TTGTGCCAATTCACAGGAGGCTTCAAGAGTAGCATGATAGATGGTTTCGAAAATCTGTTT 234764 Query 110998 ATTCATCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCA-CAAAATAAATACATCCG 111056 |||| | ||||| | || ||||| | |||| ||| || ||| | ||| | Sbjct 234765 GTTCAAAGTTTGAGCTTCTTTAGATTCAAAGG-GTAGACGCAACATCATATAGGTATCGG 234823 Query 111057 CGAGACCTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCT 111116 | ||||||||||||||||| |||||||||| || |||||| || |||| || Sbjct 234824 CCAGACCTTGAACACCCAAGGCAATAGGTCTATGCTTCATATTTGAATTTCTGGCTTCAG 234883 Query 111117 CAACGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGA 111176 ||| |||||| |||| | || ||||||| ||| | || | ||||| | || | | Sbjct 234884 GAACTGGATAATAATTACGATCGATGACTCTGTTCAAGTTATGGGTAATGACTTTGGCAA 234943 Query 111177 TTTCATGAAGTTTTTCATAATCAAAAGTGCGAGT------CTCTTCA------TTGACAT 111224 ||||||| | | || ||| | || | ||| |||||| | |||| Sbjct 234944 TTTCATGTAAACTCTCGAAATTATAACTTGCAGTTTTACCATCTTCAGACATCTCGACAA 235003 Query 111225 ACTTTGGAAGGGCGATTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACT 111284 | ||| || || || || || | ||| ||||| || || ||||| | |||| Sbjct 235004 ATGCTGGGAGAGCAATAGAGGCTAGATTACAAACGGCAGTTTCATCTGGGGAAGAATACT 235063 Query 111285 CTAAAATTTCTGTACATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCT 111344 | | ||||| ||| || ||||| ||||| || ||||| |||| |||||| ||| Sbjct 235064 CGACGATTTCACAACACAAATTGGATGATTTAATGGTACCCAAGTTCTGTTGGTTTGTCT 235123 Query 111345 TCTTGTTGCACGCATCCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGA 111404 | | || || | |||||||| | |||| | || || || || || || |||| || | Sbjct 235124 TTCTATTACATGAGTCCTTGTAAACCATGAAAGGTGTACCTGTTTCTGTTTGTGCTTGTA 235183 Query 111405 GAATAGCCTTCCA-AACATCGGCGGCTGGTACAATGGCGTTGGCCCGTCCCTCCGCCTCG 111463 || || | ||| ||| | | ||| | ||||| || | || || ||| ||| Sbjct 235184 AGATTGCATACCATAACTTTTG-GGC---TTTAATGGTTTTACCACGACCTTCCCTTTCG 235239 Query 111464 TACTTTGTGTAGAGGGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTG 111523 || || || || ||||||| || |||||| | || | |||||| || Sbjct 235240 TAACGGGTATATAGCTCTTCAAATTCATCACCCCAGACATCATCTAAACCTGGGGCAGCA 235299 Query 111524 TCTGGACAGAAAAGAGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGA 111583 ||| | || | || ||| | ||| | || | ||| || ||||| |||||||| ||| Sbjct 235300 CTGGGAGAAAATAAAGTCCAGGGCCCATCCTCTTGAACACGTTTCATAAAAAGGTCAGGA 235359 Query 111584 ATCCACAGGGATGAAAAGAGATCTC-TACACCGAGCCTCTTCGTCACCTTGGTTGAGTCG 111642 |||||||| | | || | ||| | | ||| || ||||| | ||| ||| | || Sbjct 235360 ATCCACAGAGCAGGGAACAAATCCCTTGCACGGA-TTTCTTCTTTACCATGGGTTTTTCT 235418 Query 111643 TAACTCAAGGAACTCCATGATATCCGCGTGCCATGGCT-CAAGATA-----GACTGCGAT 111696 | || | || || | |||||| || |||||||| | ||||| | | || Sbjct 235419 AATATCGACAAAGTCGAAGATATCTGCATGCCATGGTTCCAAGAAAAGCGCAAAGGCACC 235478 Query 111697 AGATCCCTTTCGACGCCCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAG 111756 || || ||| | || |||| | ||||| || || || ||| || || |||| Sbjct 235479 AGGTCTCTTGTTA---CCTCCTTGGTCCACATAACGAGCAGTATTGTTGAAAACACGAAT 235535 Query 111757 CATTGGAATAATACCATCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCT 111816 ||| ||||| | |||| || ||| || || || ||| ||| ||| | Sbjct 235536 CATAGGAATCAACCCATTCGAAGTACCGTTAGTACCGGCGATATAAGAACCTGTGGAACG 235595 Query 111817 CACATCATGGATGTGCATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGT 111876 | | | || || | |||| ||| || || ||| || || ||||| || | Sbjct 235596 GATGTTGTTAATATGAAGACCAACACCACCTGCAGTCTTAGAAATCATAGCACATTCTTT 235655 Query 111877 AAGAGTTCCATAGATACCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGA 111936 | ||| |||| || || | || ||||| ||||| |||| || ||||| || || Sbjct 235656 CAAAGTATCATAAATGCCTTCAATAGAGTCATCCTTCATGGCAATTAGGAAACATGAAGA 235715 Query 111937 CATCTGCGGTCTTGGTGTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACC 111996 ||| || || ||| |||||||| ||||| | |||||| | |||||| |||| ||| | Sbjct 235716 CATTTGGGGATGTGGAGTACCAGCGTTGAATAAGGTTGGGGAAGCGTGAGTGAA-ATATC 235774 Query 111997 TT-GGGACATCTTGTCGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGA 112055 || |||||| | ||| |||| || ||||| || || || |||||||| || | Sbjct 235775 TTAACGACATCAAATTGTAGGTCTTCAGCACAGACTCGATATCACTACCGTGGATACCCA 235834 Query 112056 TTGCGACCCGCATGAACATGTACTGTGG 112083 || || ||||| | || || |||||| Sbjct 235835 GCGCCACACGCATAACCAAGTGCTGTGG 235862 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031866543200