Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_028491.1 Length=98392 Score E Sequences producing significant alignments: (Bits) Value seq12 125 4e-24 seq11 91.5 9e-14 seq9 84.2 1e-11 >seq12 Length=1041178 Score = 125 bits (138), Expect = 4e-24 Identities = 166/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| || | || || ||||| | |||| ||||||||| ||||| || || || Sbjct 74480 CCACCTCTTAGTCTTAATACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGAC 74539 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| ||||| ||||||||||| || || | |||||||||||| || Sbjct 74540 AAGGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGA 74599 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATA-AAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||||| || ||| || ||| || || || || Sbjct 74600 ATACCTTCTTTGTC-CTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGAC 74658 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 ||||| ||||| ||||||||||| || || || |||||||| ||||| Sbjct 74659 TTCCAATGTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 74706 Score = 111 bits (122), Expect = 1e-19 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | || ||| ||||| | ||| || || |||||||||||||| || Sbjct 74024 CCACCTCTTAATCTCAGCACTAAATGCAAAGTAGATTCTTTCTGAATGTTATAATCAGAC 74083 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 || |||| ||||||| ||||| ||||| ||||| || | | ||||| || || || Sbjct 74084 AGCGTTCTACCGTCTTCCAGTTGCTTACCAGCAAAAATAAGTCTTTGTTGATCTGGTGGG 74143 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | ||||| |||||| |||| || |||| ||| | ||| ||||| || || Sbjct 74144 ATACCCTCTTTGTCTTGGATC-TTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAAC 74202 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| |||||||| |||| ||||| |||||||| ||||| Sbjct 74203 CTCTAGGGTTATAGTTTTACCAGTTAGAGTTTTGACAAAAATTTGCAT 74250 Score = 107 bits (118), Expect = 1e-18 Identities = 162/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || || |||||||| |||||||||||| || || || || Sbjct 74252 CCACCTCTCAATCTCAAGACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGGAC 74311 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| ||||| ||||||||||| || || | |||||||||||| || Sbjct 74312 AAGGTTCTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGA 74371 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || || ||||| ||| ||||| || ||| | || ||||| || || Sbjct 74372 ATACCTTCTTTGTC-CTGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCGAC 74430 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 || | |||||| || ||||| || | ||| || ||||| |||||||| Sbjct 74431 CTCGAGGGTTATAGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCAT 74478 Score = 96.9 bits (106), Expect = 2e-15 Identities = 153/214 (71%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34495 AACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAAAGTGTTCGCTCGTCT 34554 || |||| |||||||| |||||||||||||| || || || | || | | ||| Sbjct 73811 AAGACCAGGTGGAGAGTAGATTCCTTTTGAATGTTGTAGTCGGATAACGTCCTGCCATCT 73870 Query 34555 TCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGCACTCCCTCCTTGTCT 34614 || ||||| ||||||||||| || || | |||||||||||| || | || ||||| || Sbjct 73871 TCCAGTTGCTTACCGGCAAAAATCAATCTCTGTTGGTCCGGAGGAATACCTTCCTTATC- 73929 Query 34615 GTGATCTTTTGTTTTAACGATA-AAATTGTGTC-TTCGCTCTCCACTTCCACGGTTATCG 34672 ||| || | || ||| || ||| ||||| || | || || || | |||||| | Sbjct 73930 CTGAATCTTGCTCTTCACGTTATCAATAGTGTCGGACGAT-TCAACCTCGAGGGTTATGG 73988 Query 34673 TTTTACCGGTTAACGTTTTCACAAAAATCTGCAT 34706 | ||||| || | || || |||||||| ||||| Sbjct 73989 TCTTACCCGTCAGTGTCTTAACAAAAATTTGCAT 74022 Score = 96.9 bits (106), Expect = 2e-15 Identities = 162/232 (70%), Gaps = 2/232 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| ||||| || | |||| |||||||| ||||| || || || Sbjct 481499 CCACCTCTCAATCTCAAGACCAAGTGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAC 481440 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| | ||||| | ||| ||||| ||||| || || | |||||||| || || Sbjct 481439 AAAGTTCTGCCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 481380 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGATAA-AATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| |||||| | || || | ||| ||||| || || Sbjct 481379 ATACCTTCCTTGTCTTGGATCTTG-GACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 481321 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAAATCTGCATGTTG 34710 ||| | ||| || || ||||||||||| || || || ||||| ||||| ||| Sbjct 481320 TTCTAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCATCTTG 481269 >seq11 Length=681961 Score = 91.5 bits (100), Expect = 9e-14 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| |||||||| | |||| |||||||| ||||| || || || Sbjct 632817 CCACCTCTTAATCTCAAAACCAAATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGAT 632876 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| | ||| ||||||||||| || || | |||||||| || || Sbjct 632877 AAAGTTCTACCGTCTTCCAATTGCTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGG 632936 Query 34600 ACTCCCTCCTTGTCTGTGATCTT 34622 | || ||||||||| |||||| Sbjct 632937 ATACCTTCCTTGTCTTGGATCTT 632959 >seq9 Length=439147 Score = 84.2 bits (92), Expect = 1e-11 Identities = 152/220 (69%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 34480 CCGCCTCTAAGACGCAACACCAAATGGAGAGTGCTCTCCTTTTGAATGTTATAATCTGAA 34539 || ||||| | | ||| || || || | |||| || |||||||||||||| || || Sbjct 64694 CCACCTCTCAATCTCAAGACTAAGTGTAAAGTGGATTCTTTTTGAATGTTATAGTCAGAC 64635 Query 34540 AGTGTTCGCTCGTCTTCAAGTTGTTTACCGGCAAATATTAAACGCTGTTGGTCCGGCGGC 34599 | |||| ||||||| | ||| ||||| ||||| || || | |||||||| || || Sbjct 64634 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 64575 Query 34600 ACTCCCTCCTTGTCTGTGATCTTTTGTTTTAACGAT-AAAATTGTGTCTTCGCTCTCCAC 34658 | || ||||||||| ||| |||| || || | ||| ||||| || || Sbjct 64574 ATACCTTCCTTGTCT-TGAATCTTTGACTTGACATTGTCAATAGTGTCAGAAGATTCAAC 64516 Query 34659 TTCCACGGTTATCGTTTTACCGGTTAACGTTTTCACAAAA 34698 ||||| || || || ||||| || || || || |||||| Sbjct 64515 TTCCAAAGTGATGGTCTTACCAGTCAAAGTCTTGACAAAA 64476 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 314729534791961