Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_028636.1 Length=135952 Score E Sequences producing significant alignments: (Bits) Value seq12 154 1e-32 seq11 132 4e-26 seq9 132 4e-26 >seq12 Length=1041178 Score = 154 bits (170), Expect = 1e-32 Identities = 172/230 (75%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 |||||||| ||||| || || ||||| || ||| |||| || || || || ||| | ||| Sbjct 74478 ATGCAGATCTTTGTTAAGACGCTGACTGGTAAGACTATAACCCTCGAGGTCGAATCTTCC 74419 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| |||| || | ||||| ||||||||| ||||||||||| || || || || ||| Sbjct 74418 GACACGATCGACAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCGGACCAA 74359 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || ||| ||||||| || ||| | ||||| ||||| Sbjct 74358 CAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACCTTGTCCGACTACAAT 74299 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 |||||||||||||| || | || || || ||| | ||| | ||||| || Sbjct 74298 ATTCAAAAGGAGTCTACTCTCCACTTAGTCTTGAGATTGAGAGGTGGTAT 74249 Score = 140 bits (154), Expect = 3e-28 Identities = 158/212 (75%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || ||| ||||||| || | || || | ||||| ||| | || Sbjct 74706 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 74647 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 || | ||||| | ||||| ||||||||| ||||||||||| || || || || ||| Sbjct 74646 GATACCATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCGGACCAA 74587 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || ||| ||||||| || ||| | ||||| |||||| Sbjct 74586 CAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACCTTGTCCGACTACAAC 74527 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTT 27199 || ||||||||||| || |||||||| || || Sbjct 74526 ATCCAAAAGGAGTCCACTTTACATTTAGTATT 74495 Score = 125 bits (138), Expect = 6e-24 Identities = 164/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || || || || ||| | ||||| ||| ||||||| || ||||| ||| | || Sbjct 481273 ATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCTTCT 481332 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | ||||| || || |||||||| ||||| || ||||| || ||| Sbjct 481333 GACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAA 481392 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | || || | || || || ||||||||||| | || | || || |||||| Sbjct 481393 CAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACTTTGTCTGACTACAAC 481452 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 || |||||||| || || || || ||||| ||| | ||| | ||||| Sbjct 481453 ATCCAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGAGGTGG 481499 Score = 122 bits (134), Expect = 8e-23 Identities = 163/227 (72%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| || || ||||| || ||| | || || || || || ||| ||||| Sbjct 74022 ATGCAAATTTTTGTTAAGACACTGACGGGTAAGACCATAACCCTCGAGGTTGAATCGTCC 73963 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | || || || ||||| || || ||||| || || || || ||| Sbjct 73962 GACACTATTGATAACGTGAAGAGCAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAA 73903 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 ||| | || || | ||||| || ||| ||||||| | ||| | ||||| |||||| Sbjct 73902 CAGAGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGCAGGACGTTATCCGACTACAAC 73843 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGG 27214 ||||||||||| || || | || |||| || | ||| ||||||| Sbjct 73842 ATTCAAAAGGAATCTACTCTCCACCTGGTCTTAAGGTTGAGGGGTGG 73796 Score = 122 bits (134), Expect = 8e-23 Identities = 165/230 (72%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 26988 ATGCAGATATTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCC 27047 ||||| || ||||| |||||||| || || || |||| || || || || ||| | ||| Sbjct 74250 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATAACCCTAGAGGTTGAATCTTCC 74191 Query 27048 GACTCGATTGAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAA 27107 ||| | ||||| | |||||| || || ||||||||||| || || ||||| |||||| Sbjct 74190 GACACTATTGACAACGTCAAAAGTAAGATCCAAGACAAAGAGGGTATCCCACCAGATCAA 74131 Query 27108 CAGCGTTTAATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAAC 27167 || | | || | || || || ||| |||||||| || || | || ||||| ||| Sbjct 74130 CAAAGACTTATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACGCTGTCTGATTATAAC 74071 Query 27168 ATTCAAAAGGAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 ||||| || || || || || ||||| || || | || | ||||| || Sbjct 74070 ATTCAGAAAGAATCTACTTTGCATTTAGTGCTGAGATTAAGAGGTGGTAT 74021 >seq11 Length=681961 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Minus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 || || || ||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 633034 TTCGTTAAGACTTTGACTGGTAAGACCATCACTTTAGAAGTTGAATCTTCTGACACCATT 632975 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| || || |||||||| ||||| || ||||| || ||||| | || Sbjct 632974 GACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 632915 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | ||||| || |||||||||||| || || | || || |||||||| |||||| Sbjct 632914 ATCTTTGCCGGTAAGCAATTGGAAGACGGTAGAACTTTATCTGACTACAACATCCAAAAG 632855 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||||||||||||| | || | ||||| || Sbjct 632854 GAATCCACTTTACATTTGGTTTTGAGATTAAGAGGTGGTAT 632814 >seq9 Length=439147 Score = 132 bits (146), Expect = 4e-26 Identities = 162/221 (73%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 26997 TTTGTAAAAACTCTGACCGGCAAGTCTATTACTCTTGAAGTGGAACCGTCCGACTCGATT 27056 ||||| || ||| |||| || ||| | || ||| | ||||| ||| | || ||| | ||| Sbjct 64477 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 64536 Query 27057 GAGATGGTCAAACAAAAAATTCAAGACAAAGAAGGCATACCACCCGATCAACAGCGTTTA 27116 || | ||||| ||| ||||||||||| ||||| || ||||| || ||||| | || Sbjct 64537 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 64596 Query 27117 ATATACGCCGGCAAACAATTGGAAGACAGTTCGACCGTTTCCGATTACAACATTCAAAAG 27176 || | || || || |||||||||||| || ||| | || || || ||||||||||| Sbjct 64597 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTATAACATTCAAAAA 64656 Query 27177 GAGTCGACCTTACATTTGGTTTTGCGTTTGCGGGGTGGCAT 27217 || || || ||||| || || ||| | ||| | ||||| || Sbjct 64657 GAATCCACTTTACACTTAGTCTTGAGATTGAGAGGTGGTAT 64697 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 434918307579840