Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq12 111 1e-19 seq11 82.4 5e-11 >seq12 Length=1041178 Score = 111 bits (122), Expect = 1e-19 Identities = 154/214 (72%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| || ||| | || || ||| || ||| | || |||||| | Sbjct 74706 ATGCAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCT 74647 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | || ||||| |||||| |||||||||||| |||| ||| | Sbjct 74646 GATACCATTGATAAC--GTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCGGACC 74589 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || |||| ||||||||||| || ||| |||| || | | | ||||||||| |||| Sbjct 74588 AACAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACCTTGTCCGACTACA 74529 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTT 28001 |||||||||| ||| |||||| ||||| || || Sbjct 74528 ACATCCAAAAGGAGTCCACTTTACATTTAGTATT 74495 Score = 96.9 bits (106), Expect = 2e-15 Identities = 160/229 (70%), Gaps = 4/229 (2%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| || || || ||||| || ||| || | || |||||| || Sbjct 74478 ATGCAGATCTTTGTTAAGACGCTGACTGGTAAGACTATAACCCTCGAGGTCGAATCTTCC 74419 Query 27850 GAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| ||| |||| ||||| |||||| |||||||||||| |||| ||| | Sbjct 74418 GACACGATCGACAAC--GTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCGGACC 74361 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 | || |||| ||||||||||| || ||| |||| || | | | ||||||||| |||| Sbjct 74360 AACAGAGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAACCTTGTCCGACTACA 74301 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 | || ||||| ||| ||| | || || || ||| | ||| | || || Sbjct 74300 ATATTCAAAAGGAGTCTACTCTCCACTTAGTCTTGAGATTGAGAGGTGG 74252 Score = 84.2 bits (92), Expect = 2e-11 Identities = 149/215 (69%), Gaps = 12/215 (6%) Strand=Plus/Minus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||||||||| |||||||| ||||| ||| ||| || | || || ||| || Sbjct 74250 ATGCAAATTTTTGTCAAAACTCTAACTGGTAAAACTATAACCCTAGAGGTTGAATCTTCC 74191 Query 27850 GACGATGT--ACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 ||| | | |||| |||||| || || |||||||| ||| | || || | Sbjct 74190 GACACTATTGACAAC--GTCAAAAGTAAGATCCAAGACAAAGAGGGTATCCCACCAGATC 74133 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACG----AACGCAGCTTGTCCGAT 27963 | ||| | | |||||||| || || ||| |||| |||| ||||| |||| ||| Sbjct 74132 AACAAAGACTTATTTTTGCTGGTAAGCAACTGGAAGACGGTAGAACGC----TGTCTGAT 74077 Query 27964 TACAACATCCAAAAAGAGAGCACTTTGCATTTGGT 27998 || ||||| || ||||| ||||||||||| || Sbjct 74076 TATAACATTCAGAAAGAATCTACTTTGCATTTAGT 74042 >seq11 Length=681961 Score = 82.4 bits (90), Expect = 5e-11 Identities = 90/120 (75%), Gaps = 0/120 (0%) Strand=Plus/Minus Query 27883 GACAAAGAAGGTGTTCCGATGGAGCAGCAACGGTTAATTTTTGCCGGAAAACAATTGGAC 27942 ||||| |||||| | || || || ||| | || || |||||||| || |||||||| Sbjct 632950 GACAAGGAAGGTATCCCACCTGACCAACAAAGATTGATCTTTGCCGGTAAGCAATTGGAA 632891 Query 27943 GACGAACGCAGCTTGTCCGATTACAACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTG 28002 |||| | | || || || |||||||||||||| || |||||| |||||||||||| Sbjct 632890 GACGGTAGAACTTTATCTGACTACAACATCCAAAAGGAATCCACTTTACATTTGGTTTTG 632831 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 355862326269759