Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_031465.1 Length=360610 Score E Sequences producing significant alignments: (Bits) Value seq12 120 7e-22 seq11 105 2e-17 >seq12 Length=1041178 Score = 120 bits (132), Expect = 7e-22 Identities = 166/231 (72%), Gaps = 1/231 (0%) Strand=Plus/Plus Query 151889 TCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCC 151948 ||| | ||| | || ||||||||||| ||||| || ||||| |||| || ||||| || Sbjct 74263 TCTCAAGACTAAGTGGAGAGTAGACTCCTTTTGAATATTGTAGTCGGACAAGGTTCTACC 74322 Query 151949 ATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTT 152008 |||||| || || ||||| || || | |||||| ||||||| | || ||||| || Sbjct 74323 ATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGAATACCTTCTTT 74382 Query 152009 TTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAAT 152068 || ||||||||| ||||| | || | |||| ||| || || || || || || Sbjct 74383 GTCCTGAATTTTTGACTTGACGTTGTCGATCGTGTCGGAAGATTCGACCTCGAGGGTTAT 74442 Query 152069 AGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCATTTTACC-CTTACTCT 152118 ||| || || || || ||||| || |||| |||||| ||| |||| ||| Sbjct 74443 AGTCTTACCAGTCAGCGTCTTAACAAAGATCTGCATACCACCTCTTAGTCT 74493 Score = 114 bits (126), Expect = 3e-20 Identities = 158/221 (71%), Gaps = 0/221 (0%) Strand=Plus/Plus Query 151884 CTGAGTCTGAGGACAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTT 151943 || ||||| | || | ||| | ||| ||||| |||||||||||||| |||| || ||| Sbjct 74486 CTTAGTCTTAATACTAAATGTAAAGTGGACTCCTTTTGGATGTTGTAGTCGGACAAGGTT 74545 Query 151944 CTCCCATCTTCTAGGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCT 152003 || |||||||| || || ||||| || || | |||||| ||||||| | || ||| Sbjct 74546 CTACCATCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGAATACCT 74605 Query 152004 TCCTTTTCTTGAATTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGA 152063 || || || ||||||||| ||||| | || | | | || ||| || ||||| | Sbjct 74606 TCTTTGTCCTGAATTTTTGACTTGACGTTATCAATGGTATCAGAAGATTCGACTTCCAAT 74665 Query 152064 GTAATAGTTTTGCCCGTGAGAGTCTTCACGAAGACCTGCAT 152104 || || ||||| || || | |||||| || || | ||||| Sbjct 74666 GTTATGGTTTTACCGGTCAAAGTCTTGACAAAAATTTGCAT 74706 Score = 107 bits (118), Expect = 4e-18 Identities = 151/211 (72%), Gaps = 1/211 (0%) Strand=Plus/Minus Query 151897 CAAGATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTA 151956 |||| || | ||| || || |||||||||||||| || | |||||||| |||||||| | Sbjct 481479 CAAG-TGCAAAGTGGATTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCATCTTCCA 481421 Query 151957 GGCTTTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAA 152016 || || || ||||| | || || ||||| | | ||| |||||||| ||||| | Sbjct 481420 ATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGA 481361 Query 152017 TTTTTTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGC 152076 | || |||||| | || | |||| ||| || ||||| || |||||||| || | Sbjct 481360 TCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCTAGGGTAATAGTCTTAC 481301 Query 152077 CCGTGAGAGTCTTCACGAAGACCTGCATTTT 152107 | || | |||||| ||||| | ||||| || Sbjct 481300 CGGTTAAAGTCTTGACGAAAATTTGCATCTT 481270 >seq11 Length=681961 Score = 105 bits (116), Expect = 2e-17 Identities = 141/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 151901 ATGAAGAGTAGACTCTTTTTGGATGTTGTAATCGGCTAAAGTTCTCCCATCTTCTAGGCT 151960 ||| | ||| || || |||||||||||||| || | ||||||||| || ||||| | Sbjct 632840 ATGTAAAGTGGATTCCTTTTGGATGTTGTAGTCAGATAAAGTTCTACCGTCTTCCAATTG 632899 Query 151961 TTTCCCGGCGAAGATAAGCCTCTGCTGGTCCGCCGAGATTCCTTCCTTTTCTTGAATTTT 152020 || ||||| ||||| | || || ||||| | | ||| |||||||| ||||| || || Sbjct 632900 CTTACCGGCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGGATCTT 632959 Query 152021 TTGTTTGACAGTCTCTACGCTGTCTGAACTCTCTACTTCAAGAGTAATAGTTTTGCCCGT 152080 |||||| | || | | |||| ||| || ||||| | ||| || || || || || Sbjct 632960 GGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCTAAAGTGATGGTCTTACCAGT 633019 Query 152081 GAGAGTCTTCACGAAG 152096 | |||||| |||||| Sbjct 633020 CAAAGTCTTAACGAAG 633035 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1153820548683407