Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20paradoxus_20[genbank_20GCA_5F002079175.1_202017-03- 21] 17 sequences; 11,929,789 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq12 134 3e-26 seq9 111 4e-19 >seq12 Length=1041178 Score = 134 bits (148), Expect = 3e-26 Identities = 157/212 (74%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || || || || || || || || ||||||||||| ||| || ||| Sbjct 74019 CAAATTTTTGTTAAGACACTGACGGGTAAGACCATAACCCTCGAGGTTGAATCGTCCGAC 73960 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| || ||||||||||| || ||||| || ||||||||||| || Sbjct 73959 ACTATTGATAACGTGAAGAGCAAGATTCAGGATAAGGAAGGTATTCCTCCGGACCAACAG 73900 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | || || ||||| || || || |||||||| ||||| | |||| || ||| | Sbjct 73899 AGATTGATTTTTGCCGGTAAGCAACTGGAAGATGGCAGGACGTTATCCGACTACAACATT 73840 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAG 178135 ||||| ||||| || || || || || || || Sbjct 73839 CAAAAGGAATCTACTCTCCACCTGGTCTTAAG 73808 Score = 132 bits (146), Expect = 1e-25 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || || || || || || || || || || || ||||||||||| ||| || ||| Sbjct 74475 CAGATCTTTGTTAAGACGCTGACTGGTAAGACTATAACCCTCGAGGTCGAATCTTCCGAC 74416 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || ||||| |||||||| ||| ||||||||||||||||| || ||||||||||| || Sbjct 74415 ACGATCGACAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCGGACCAACAG 74356 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | | || || ||||| || || || |||||||| || || |||| |||| || || | Sbjct 74355 AGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAAC-CTTGTCCGACTACAATAT 74297 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| || || || || || | || |||||| | ||| Sbjct 74296 TCAAAAGGAGTCTACTCTCCACTTAGTCTTGAGATTGAGA 74257 Score = 132 bits (146), Expect = 1e-25 Identities = 163/220 (74%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 |||||||| || || ||| | || || ||||| || || | || || ||| || || Sbjct 74703 CAAATTTTTGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTCGAATCTTCTGAT 74644 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 ||||| || |||||||| ||| ||||||||||||||||| || ||||||||||| || Sbjct 74643 ACCATTGATAACGTCAAGTCAAAAATTCAGGACAAAGAAGGTATTCCTCCGGACCAACAG 74584 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGT 178102 | | || || ||||| || || || |||||||| || || |||| |||| || ||| | Sbjct 74583 AGGTTGATTTTTGCCGGTAAGCAACTGGAAGATGGTAGAAC-CTTGTCCGACTACAACAT 74525 Query 178103 CCAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 |||||| || || || | ||| | || || ||||| ||| Sbjct 74524 CCAAAAGGAGTCCACTTTACATTTAGTATTAAGACTAAGA 74485 Score = 125 bits (138), Expect = 2e-23 Identities = 159/219 (73%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 ||||||||||| || ||| | || || || || || ||||| || || ||| || ||| Sbjct 481276 CAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTAGAAGTTGAATCTTCTGAC 481335 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || || ||||| ||||| || ||||| ||||| ||||| || ||||| ||| Sbjct 481336 ACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATCCCACCTGACCAACAA 481395 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || | ||||| || || || || | |||||||| || ||| | | || || ||| || Sbjct 481396 AGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGCAGAACTTTGTCTGACTACAACATC 481455 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||| ||||| || |||| | || |||||| | ||| Sbjct 481456 CAAAAGGAATCCACTTTGCACTTGGTCTTGAGATTGAGA 481494 >seq9 Length=439147 Score = 111 bits (122), Expect = 4e-19 Identities = 155/215 (72%), Gaps = 2/215 (1%) Strand=Plus/Plus Query 177929 TTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCAT 177988 ||| || || ||| | || || || || ||||| | || || ||| || ||||| || Sbjct 64476 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 64535 Query 177989 CGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACT 178048 || || ||||| ||||||||| ||||| ||||| ||||| || ||||| ||| || | Sbjct 64536 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 64595 Query 178049 TATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCC-GATTATAACGTCCAAA 178107 ||||| || || || || | ||||| || || || |||| | || |||||| | |||| Sbjct 64596 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAAC-CTTGTCTGACTATAACATTCAAA 64654 Query 178108 AAGAATCAACACTGCATCTTGTTTTGAGACTCAGA 178142 ||||||| || | || | || |||||| | ||| Sbjct 64655 AAGAATCCACTTTACACTTAGTCTTGAGATTGAGA 64689 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203730937812298