Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F000805465.1_202014- 12-19] 878 sequences; 21,919,346 total letters Query= NC_001623.1 Length=133894 Score E Sequences producing significant alignments: (Bits) Value seq165 116 3e-21 seq32 104 2e-17 >seq165 Length=43850 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || || | || || ||||| || |||||||| || ||| ||| | | Sbjct 16262 ATGCAGATCTTTGTTAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 16203 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| |||||| || || |||||| | || ||||||| Sbjct 16202 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 16143 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || || || || ||||| | ||| || | |||||||| Sbjct 16142 CAAAGATTGATCTTTGCCGGTAAGCAGCTAGAAGACGGTAGAACGCTGTCTGATTACAAC 16083 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 |||||||||||||||||||||||| ||||||| |||| |||| || Sbjct 16082 ATTCAGAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 16036 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 ||||| || ||| |||| || ||||| || |||||||| || ||| ||| | | Sbjct 16490 ATGCAGATTTTCGTCAAGACTTTGACCGGTAAAACCATAACATTGGAAGTTGAATCTTCC 16431 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| |||||| || || |||||| | || ||||||| Sbjct 16430 GATACCATCGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATCCCTCCAGATCAA 16371 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | |||||||| || || || | ||||| | ||| || | || ||||| Sbjct 16370 CAAAGATTGATCTTTGCCGGTAAGCAGTTAGAAGACGGTAGAACCTTGTCTGACTACAAC 16311 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || |||||||||||||||||| ||||||| |||| |||| || Sbjct 16310 ATCCAAAAGGAATCTACTCTTCACTTGGTGTTGAGATTGAGAGGTGG 16264 Score = 86.0 bits (94), Expect = 5e-12 Identities = 146/212 (69%), Gaps = 0/212 (0%) Strand=Plus/Minus Query 28962 ATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCCGCA 29021 |||||||| ||| ||||||| | || || || || || ||| || ||| | | Sbjct 15806 ATGCAAATTTTCGTCAAAACTCTAACAGGGAAGACTATAACCCTAGAGGTTGAATCTTCC 15747 Query 29022 GAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAA 29081 || || | | | | ||||| |||||| || || |||||| | || ||| || Sbjct 15746 GACACTATTGACAACGTTAAGTCGAAAATTCAAGACAAGGAAGGTATTCCTCCAGACCAG 15687 Query 29082 CAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTACAAT 29141 |||||| | || ||||| || || ||||| |||||| | ||| || | || |||||| Sbjct 15686 CAAAGATTGATTTTTGCCGGTAAGCAACTAGAAGATGGTAGAACGCTGTCGGACTACAAT 15627 Query 29142 ATTCAGAAGGAATCTACTCTTCACATGGTGTT 29173 ||||| ||||| || ||||||||| | || || Sbjct 15626 ATTCAAAAGGAGTCCACTCTTCACCTTGTCTT 15595 Score = 82.4 bits (90), Expect = 7e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 29046 AAAATTGCCGATAAAGAAGGTGTGCCCGTAGATCAACAAAGACTTATCTTTGCGGGCAAA 29105 |||||| || || |||||| | || ||||||||||||| | || ||||| || || Sbjct 15950 AAAATTCAAGACAAGGAAGGTATTCCTCCAGATCAACAAAGATTGATTTTTGCCGGTAAG 15891 Query 29106 CAACTGGAAGATTCCAAAACTATGGCCGATTACAATATTCAGAAGGAATCTACTCTTCAC 29165 ||||||||||| | ||| || | ||||| || |||||||| || ||||| | || Sbjct 15890 CAACTGGAAGACGGTAGAACGCTGTCTGATTATAACATTCAGAAAGAGTCTACGTTGCAT 15831 Query 29166 ATGGTGTTACGATTACGAGGAGG 29188 ||||||| |||| |||| || Sbjct 15830 TTGGTGTTGAGATTGAGAGGTGG 15808 >seq32 Length=102181 Score = 104 bits (114), Expect = 2e-17 Identities = 161/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 28959 AAAATGCAAATATTCATCAAAACATTGACGGGCAAAACCATTACCGCCGAAACGGAACCC 29018 || |||||||| ||| |||| || || || || || || |||||| ||| ||| | Sbjct 8395 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 8454 Query 29019 GCAGAGACGGTGGCCGATCTTAAGCAAAAAATTGCCGATAAAGAAGGTGTGCCCGTAGAT 29078 | || || | | | || | ||| || || || || |||||| | || || Sbjct 8455 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 8514 Query 29079 CAACAAAGACTTATCTTTGCGGGCAAACAACTGGAAGATTCCAAAACTATGGCCGATTAC 29138 ||||||||| | |||||||| || || ||| |||||||| | |||| || |||| ||| Sbjct 8515 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 8574 Query 29139 AATATTCAGAAGGAATCTACTCTTCACATGGTGTTACGATTACGAGGAGG 29188 || || || |||||||||||||| ||| |||| || |||| |||| || Sbjct 8575 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 8624 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 428331416537090