Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F000805465.1_202014-
12-19] 878 sequences; 21,919,346 total letters
Query= NC_003083.1
Length=118584
Score E
Sequences producing significant alignments: (Bits) Value
seq32 107 1e-18
seq2 102 6e-17
seq8 93.3 3e-14
seq165 89.7 4e-13
seq60 89.7 4e-13
seq72 87.8 1e-12
>seq32
Length=102181
Score = 107 bits (118), Expect = 1e-18
Identities = 151/212 (71%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| || || ||||| ||||| ||||||||||||| || ||| ||| |||||||
Sbjct 8606 ACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGACAAAGTTCTACCATCTTCC 8547
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||| || || ||| |||| | ||||||||| || || | |||||||| ||
Sbjct 8546 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGG 8487
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|| | |||||| | ||| ||||||| | || ||| | ||| || | ||
Sbjct 8486 ATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACTTCCAGGGTAATAGTCTTA 8427
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| || || || || ||||||||||| ||
Sbjct 8426 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 8395
>seq2
Length=186594
Score = 102 bits (112), Expect = 6e-17
Identities = 136/189 (72%), Gaps = 0/189 (0%)
Strand=Plus/Minus
Query 18129 GTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAATTGTTTGCCC 18188
|| ||||||||||||||||||||||| | || ||| ||| ||||||||||| || ||
Sbjct 30306 GTGGATTCTTTTTGAATGTTGTAGTCAGACAAGGTTCTACCGTCTTCCAATTGCTTACCA 30247
Query 18189 GCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATTTGTTGCTTG 18248
||| |||| | ||||||||| || || | |||||||| || ||| | | ||||
Sbjct 30246 GCAAAGATCAATCTTTGTTGGTCAGGTGGGATACCTTCCTTGTCTTGAATCTTTGACTTG 30187
Query 18249 ACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCGGTCAATGTT 18308
|| | ||| ||||||| | || ||| | |||||| | || || ||||| ||
Sbjct 30186 ACATTGTCAATAGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCAGTCAAAGTC 30127
Query 18309 TTTACAAAA 18317
|| ||||||
Sbjct 30126 TTGACAAAA 30118
>seq8
Length=154085
Score = 93.3 bits (102), Expect = 3e-14
Identities = 140/198 (71%), Gaps = 2/198 (1%)
Strand=Plus/Minus
Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179
|||| ||||| ||||| ||||| || |||||||| | || ||| ||| |||||||||
Sbjct 41245 ATGTAAAGTG--GATTCCTTTTGGATATTGTAGTCAGACAAGGTTCTACCGTCTTCCAAT 41188
Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCAATT 18239
|| || || ||| |||| | ||||||||| || || | |||||||| || |||
Sbjct 41187 TGCTTACCAGCAAAGATTAATCTTTGTTGGTCAGGAGGAATACCTTCCTTGTCTTGAATC 41128
Query 18240 TGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTGCCG 18299
| | |||||| | ||| |||||| | || ||| | |||||| | || ||
Sbjct 41127 TTTGACTTGACATTGTCAATGGTGTCAGAAGATTCAACTTCCAAAGTGATGGTCTTACCA 41068
Query 18300 GTCAATGTTTTTACAAAA 18317
||||| ||||| ||||||
Sbjct 41067 GTCAAAGTTTTGACAAAA 41050
>seq165
Length=43850
Score = 89.7 bits (98), Expect = 4e-13
Identities = 145/209 (69%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| |||||| || ||||| ||||| ||||||||||| | || ||| ||| |||||
Sbjct 16282 ACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCTTCT 16341
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
|| || || || ||| |||| | |||||||||||| || | |||||||| || |
Sbjct 16342 AACTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCTTGA 16401
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|||| ||| || | | | || || | || ||| | || ||| ||||
Sbjct 16402 ATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGTTTTA 16461
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCAT 18325
|||||||| || || || ||||| |||||
Sbjct 16462 CCGGTCAAAGTCTTGACGAAAATCTGCAT 16490
>seq60
Length=75461
Score = 89.7 bits (98), Expect = 4e-13
Identities = 147/212 (69%), Gaps = 0/212 (0%)
Strand=Plus/Minus
Query 18117 ACCATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCC 18176
|||| ||| | || || || ||||| ||||||||||| | || ||| | | ||||||
Sbjct 10581 ACCAAGTGTAAAGTGGACTCCTTTTGGATGTTGTAGTCAGACAAAGTTCTGCCGTCTTCC 10522
Query 18177 AATTGTTTGCCCGCATAGATAAGTCTTTGTTGATCCACGGGCACGCCTTCCTTATCGGCA 18236
||||| || || ||| |||| | ||||||||| || || | |||||||| || |
Sbjct 10521 AATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGAATACCTTCCTTGTCTTGA 10462
Query 18237 ATTTGTTGCTTGACCTGTGCAACAGTGTCACCGGGCTCGGTTTCAATGGTGATGCTTTTG 18296
|| | |||||| | ||| |||||| | || ||||| ||| || | ||
Sbjct 10461 ATCTTAGACTTGACATTGTCAATAGTGTCTGAAGATTCAACTTCAAGGGTAATAGTCTTA 10402
Query 18297 CCGGTCAATGTTTTTACAAAAATTTGCATTTT 18328
||||| || || || || ||||||||||| ||
Sbjct 10401 CCGGTTAAAGTCTTGACGAAAATTTGCATCTT 10370
>seq72
Length=71373
Score = 87.8 bits (96), Expect = 1e-12
Identities = 75/92 (82%), Gaps = 2/92 (2%)
Strand=Plus/Minus
Query 18120 ATGTGAAGTGTTGATTCTTTTTGAATGTTGTAGTCGGCCATTGTTTTACAATCTTCCAAT 18179
|||| ||||| ||||| ||||||||||||||||||| || ||| ||| |||||||||
Sbjct 32125 ATGTAAAGTG--GATTCCTTTTGAATGTTGTAGTCGGACAAGGTTCTACCGTCTTCCAAT 32068
Query 18180 TGTTTGCCCGCATAGATAAGTCTTTGTTGATC 18211
|| || || ||| |||| | ||||||||| ||
Sbjct 32067 TGCTTACCAGCAAAGATCAATCTTTGTTGGTC 32036
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 379339940782110
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |