Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F000805465.1_202014- 12-19] 878 sequences; 21,919,346 total letters Query= NC_005902.1 Length=186250 Score E Sequences producing significant alignments: (Bits) Value seq141 132 6e-26 seq3 114 2e-20 seq326 104 3e-17 seq159 98.7 1e-15 seq46 96.9 4e-15 seq177 87.8 2e-12 >seq141 Length=49634 Score = 132 bits (146), Expect = 6e-26 Identities = 388/589 (66%), Gaps = 28/589 (5%) Strand=Plus/Minus Query 164398 AATTTTGAAGAAATGGGAGTAGGTGGACTAGATCGAGAATTTTCTCTTATTTTCAGACGA 164457 || |||||||| |||| || ||||| | ||| ||| ||| || ||||||||| || Sbjct 43949 AAGTTTGAAGATTTGGGTGTCGGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGA 43890 Query 164458 GCATTTGCTTCTAGATCAGTTCCTATCGAAATAATaaaaaaaTTAGGCTGTAAACATATA 164517 || ||||| | || ||||| | | ||| ||||| | || | ||| | Sbjct 43889 GCGTTTGCAAGTCGAATCTTTCCTCCTTCAGTTATAGAAAAACTGGGTATTTCTCATGTT 43830 Query 164518 AAAGGAATTTTATTACATGGACCTCCTGGTTGCGGTAAAACATTAATGGCTCGATGCATT 164577 ||||| | |||| | || ||||| ||| ||||| || ||||| || || ||| Sbjct 43829 AAAGGTTTGCTATTGTACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATT 43770 Query 164578 GCT-CAAGCTTTTAAATCGC----GACCCGTTAAAATTGTTAATGGTCCTGAATTATTGA 164632 | | ||| | | ||| || || || ||||| || |||||||| ||| | |||| Sbjct 43769 GGTACAA--TGCTGAAT-GCTAAAGAGCCC--AAAATCGTCAATGGTCCAGAAATTTTGA 43715 Query 164633 ACAAATATGTAGGTGAGTCAGAAGCTAATGTTAGAAAGTTGTTTCAGGAGGCTGAAGAAG 164692 ||| || || ||| ||||||| || || | || || ||| |||| || |||| || Sbjct 43714 GCAAGTACGTTGGTTCTTCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAG 43655 Query 164693 AACAAAAGAAAGC--AGGTTTAGCTAG-TAAATTACATGTTATTGTTTTTGATGAGATAG 164749 || | | | || ||| | || | | |||||| ||||| |||| |||||| | | Sbjct 43654 AATATAGG---GCCAAGGGTGAGGAATCTTCCTTACATATTATTATTTTCGATGAGCTGG 43598 Query 164750 ATGCTCTTTGCAAAAAACGTGGT------GATAATATTATTCATGATG----CAGTG--G 164797 || || ||| ||| | | ||| | | || || | || | || || | Sbjct 43597 ATTCTGTTTTCAAGCAGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAG 43538 Query 164798 TTAATCAGTTGCTTTCTAAAATAGATGGTGTAGAATCCTTAAATAATATTTTAATTGTAG 164857 ||||||| ||| | ||||||| |||||||| || || ||||||||||| || | | Sbjct 43537 TTAATCAATTGTTAGCTAAAATGGATGGTGTTGATCAGTTGAATAATATTTTGGTTATTG 43478 Query 164858 GTATGACCAACCGACCTGATTTAATTGATGATGCTTTATTACGACCTGGTCGATTAGAAT 164917 |||||||||| || |||||||| || |||| | || || || ||| |||| ||| Sbjct 43477 GTATGACCAATCGTAAAGATTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAAG 43418 Query 164918 TGAAAATAGAAATAGGATTACCCGACAAAGAAGGACGCCTTCAAATTTT 164966 | || | ||||| |||||||| || ||||| | || |||||||| Sbjct 43417 TCCAAGTTGAAATTCATTTACCCGATGAAAAAGGAAGACTCCAAATTTT 43369 >seq3 Length=183324 Score = 114 bits (126), Expect = 2e-20 Identities = 123/163 (75%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 19341 TAAGATCTTCTAAAATACCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAG 19400 ||||| || | || || ||| |||| ||||| || ||||||||| | | |||||| | Sbjct 153103 TAAGAACTACAAAGATTCCTCAAATTGGTGACAAATTTGCTTCTCGTCACGGTCAAAAGG 153162 Query 19401 GCACATGTGGTATGATTTATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGC 19460 | || |||||| | |||||| |||||||||||| ||||| ||| ||||| || | Sbjct 153163 GTACTATTGGTATCACATATCGTAGAGAAGATATGCCATTTACCGCAGAAGGTATTGTTC 153222 Query 19461 CGGATCTTATTATTAACCCACATGCTTTTCCAAGTCGAATGAC 19503 | ||| | ||||||||||| |||||| ||||| ||| ||||| Sbjct 153223 CAGATTTGATTATTAACCCTCATGCTATTCCATCTCGTATGAC 153265 >seq326 Length=22931 Score = 104 bits (114), Expect = 3e-17 Identities = 367/571 (64%), Gaps = 43/571 (8%) Strand=Plus/Plus Query 6699 TGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAAT-TAT 6757 ||||||||||||||||||| | |||||| ||| || || |||||| | ||| | | Sbjct 2155 TGGATGAGGATTATAATCTTCAATTTCAAAGTCTGTCAACTTGAAATCA--TCAATGTCT 2212 Query 6758 CAGACtttttttttAATATTACAACAGGTGAA-GGTTTT--ATTGATCGAGTTAATTGTT 6814 || | ||||||| || | ||| ||| || ||| || || | ||||| Sbjct 2213 TTAACGTCCCTTTTAATCTTTAGTTTCGGGAATGGTCTTGGATT--TCTGGTGATTTGTT 2270 Query 6815 CTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATT 6874 |||| | || | || || ||| ||||| ||| ||||| || | |||||||| || | Sbjct 2271 CTTTCAAGGCATCAATGTGGTCTTTATAAACATGTGCATCCCCCAAAGTATGAATGAACT 2330 Query 6875 CACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTA 6934 ||||||| | ||| || ||| ||| |||||| | || || || ||||| || || | Sbjct 2331 CACCTGGCTCCATGTCGACAACTTTAGCAATCATTCTAGTCAACAAAGCATATGATGCAA 2390 Query 6935 CATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAACATTGACAAG-ATAAA 6993 ||||| ||||| || || |||||||| || | ||| || || ||| || || Sbjct 2391 TGTTAAATGGTACTCCCAACCCCATATCACAAGAACGTTGGTACAAT----AAGCATGAA 2446 Query 6994 A---------TATTG------------TCTATAG---------CATAAAATTGACACAAT 7023 | || | ||| | | |||| || || | || Sbjct 2447 AGGCGGGGCTTACCGGATCCTTCTCCTTCTTTGGGGAAACTGACATAGAACTGTGAAAAA 2506 Query 7024 ACATGACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAA 7083 | ||| ||||| || ||| | | || | ||||| ||| ||||| ||| |||| | Sbjct 2507 ATATGGCATGGCGGCAAAGCCATTTTGTCAAAATCAGCTGGGTTCCAGGCACTCATAATG 2566 Query 7084 ATACGTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATA 7143 || | |||||| | |||||||| |||| ||| |||| || |||||||| ||| Sbjct 2567 ATTCTTCTATCGTAGGGATTTGTCTTTAGTTTATGAATAACCTGTTTCAATTGATCAATA 2626 Query 7144 CCCTGACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGA 7203 || || || ||| | || || | | || ||||| |||||||| ||||||||| Sbjct 2627 CCTTGTCCAGTATAGTCGTCATCGCACGTCTTGTATTTAGCACCAAAATGCCTCCATTGA 2686 Query 7204 AACCCATAAATAGGACCTAAATCACCTTCTT 7234 || ||||||| || || | ||| ||| ||| Sbjct 2687 AATCCATAAACGGGCCCCAGATCTCCTACTT 2717 >seq159 Length=45349 Score = 98.7 bits (108), Expect = 1e-15 Identities = 363/567 (64%), Gaps = 35/567 (6%) Strand=Plus/Plus Query 6699 TGGATGAGGATTATAATCTAACAATTCAAAATCTTCAAATTTAAAATCACATAAATTATC 6758 ||| |||||||| || ||| | ||| |||||||| || ||||| ||| | |||| || Sbjct 31968 TGGGTGAGGATTGTAGTCTTCAATTTCGAAATCTTCTAACTTAAAGTCA--TCAATT-TC 32024 Query 6759 AGACttttt--ttttAATATTACAACAGGTGAAGGTTTTATTGATCGAGTTAA--TTGTT 6814 | | | ||||||| || | || ||| | | | | |||| | || ||||| Sbjct 32025 TGTAATGTCCCTTTTAATCTTTAATTTGGGGAATGGTCT-TGGATCTCTTGAAATTTGTT 32083 Query 6815 CTTTTATAGCTTTTATATGATCTAAATAAATATGAGCATCTCCTAGCGTATGAATAAATT 6874 | || | || | |||||||| ||| | ||| ||||| || | |||||||| || | Sbjct 32084 CATTCAAGGCATCAATATGATCCTTATACACATGTGCATCCCCCAAAGTATGAATGAACT 32143 Query 6875 CACCTGGTTTCATATCAACAGCTTGAGCAATTAAATATGTTAATAATGCATAAGAAGCTA 6934 |||| |||| ||||||||| ||| ||| || | || | || ||||| || || | Sbjct 32144 CACCCGGTTCCATATCAACGACTTTAGCTATCATTCTAGTCAGTAGCGCATATGAGGCGA 32203 Query 6935 CATTAAAAGGTACACCTAATCCCATATCTGCTGATCTTTGATAA------CA-------- 6980 |||||| || ||||| | |||||||| || | ||| || || Sbjct 32204 TATTAAATGGCACACCGAGCCCCATATCACAGGAACGTTGGTACAGCAAGCACGAAAGGC 32263 Query 6981 ----TTGACAAGATAAAATATTGTCTATAG---------CATAAAATTGACACAATACAT 7027 || || | | | | ||| | | |||||||||| | || | | Sbjct 32264 GAGGTTTACCACTTCCACTTCCCTCTTTGGGGAAACTGACATAAAATTGTGAAAAAATGT 32323 Query 7028 GACATGGAGGTAAAACAGCCTGATCTATATCAGATGGATTCCAAGCAGTCATTAAAATAC 7087 | ||||| ||||| | || || | ||| | || |||||||| |||| | || | Sbjct 32324 GGCATGGCGGTAAGGCCATCTTGTCAAAATCTGCAGGGTTCCAAGCGCTCATGATGATTC 32383 Query 7088 GTCTATCATTTGGATTTGTTTTTAATTTTGTTATAATTATTTGTAATTGATCTATACCCT 7147 |||||||| || ||||| |||||||| ||||| | | ||||| ||||| | Sbjct 32384 TTCTATCATAAGGGTTTGTCTTTAATTTGTGTATAACCTGCTTCAGCTGATCGATACCTT 32443 Query 7148 GACCTTCATAATTAGTATGACAATTTATATAATTAGCTCCAAAATGTCTCCATTGAAACC 7207 | || ||| | | | || | | || || || ||||||||||||||||| |||| Sbjct 32444 GTCCGGTATAGTCATCGTCGCAGGTCTTGTATTTGGCACCAAAATGTCTCCATTGGAACC 32503 Query 7208 CATAAATAGGACCTAAATCACCTTCTT 7234 |||||| |||||| | ||| ||| ||| Sbjct 32504 CATAAACAGGACCCAGATCCCCTACTT 32530 >seq46 Length=84875 Score = 96.9 bits (106), Expect = 4e-15 Identities = 109/146 (75%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 19358 CCTGAAATAGGTGATAAGTTTGCTTCTTTTACTGCTCAAAAAGGCACATGTGGTATGATT 19417 ||| |||| ||||| || || |||||| | || |||||| || || |||||| | Sbjct 65259 CCTCAAATCGGTGACAAATTCGCTTCTCGTCATGGTCAAAAGGGTACTATTGGTATCACA 65318 Query 19418 TATCGTCAAGAAGATATGCCTTTTACTAAAGATGGTATAGTGCCGGATCTTATTATTAAC 19477 |||||| |||||||||||| ||||| ||| ||||| || || ||| | ||||| || Sbjct 65319 TATCGTAGAGAAGATATGCCATTTACAGCAGAAGGTATCGTTCCAGATTTAATTATCAAT 65378 Query 19478 CCACATGCTTTTCCAAGTCGAATGAC 19503 || |||||| ||||| ||| ||||| Sbjct 65379 CCTCATGCTATTCCATCTCGTATGAC 65404 >seq177 Length=41604 Score = 87.8 bits (96), Expect = 2e-12 Identities = 252/385 (65%), Gaps = 16/385 (4%) Strand=Plus/Plus Query 164605 AAAATTGTTAATGGTCCTGAATTATTGAACAAATATGTAGGTGAGTCAGAAGCTAATGTT 164664 || |||||||| ||||||||| | || | || ||||| ||| ||||||| || | Sbjct 5990 AAGATTGTTAACGGTCCTGAAGTTTTAAGTAAGTATGTTGGTTCCTCAGAAGAAAACATC 6049 Query 164665 AGAAAGTTGTTTCAGGAGGCTGAAGAAGAACAAAAGA--AAGCAGGTTTAGCTAGTAAAT 164722 | || || || | || || |||| |||| | ||| ||| || | | | | Sbjct 6050 CGTAATTTATTCAAAGACGCAGAAGCAGAATACAAGGCCAAGGGGGATGAATC--TTCCT 6107 Query 164723 TACATGTTATTGTTTTTGATGAGATAGATGCTCTTTGCAAAAA---------ACGTGGTG 164773 ||||| | || |||||||||| | ||| || ||| ||| | | | |||| Sbjct 6108 TACATATCATCATTTTTGATGAACTGGATTCTGTTTTCAAGCAGAGAGGTTCAAGAGGTG 6167 Query 164774 ATAATATTATTCATGATG-CAGTG--GTTAATCAGTTGCTTTCTAAAATAGATGGTGTAG 164830 || || | | | || || || |||||||| ||||| ||||||| || ||||| | Sbjct 6168 ATGGTACTGGTGTAGGTGACAATGTAGTTAATCAATTGCTGGCTAAAATGGACGGTGTTG 6227 Query 164831 AATCCTTAAATAATATTTTAATTGTAGGTATGACCAACCGACCTGATTTAATTGATGATG 164890 | | |||||||| || | | |||||||||||||| ||||| || ||| || Sbjct 6228 ATCAACTGAATAATATATTGGTCATTGGTATGACCAACCGTAAAGATTTGATCGATATTG 6287 Query 164891 CTTTATTACGACCTGGTCGATTAGAATTGAAAATAGAAATAGGATTACCCGACAAAGAAG 164950 || | ||||| || ||| |||| ||| | | | ||||| ||||| ||| || ||| Sbjct 6288 CTCTTTTACGTCCAGGTAGATTCGAAGTTCAGGTTGAAATTCATTTACCGGACGAAAAAG 6347 Query 164951 GACGCCTTCAAATTTTAAAAGTTCA 164975 | | || || ||||| || |||| Sbjct 6348 GTAGACTGCAGATTTTTGAAATTCA 6372 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 595865460304800