Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F000805465.1_202014- 12-19] 878 sequences; 21,919,346 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq405 120 2e-22 seq165 86.0 5e-12 >seq405 Length=15789 Score = 120 bits (132), Expect = 2e-22 Identities = 162/223 (73%), Gaps = 2/223 (1%) Strand=Plus/Minus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || |||| ||| || || |||| ||||| |||||||||||||| ||||| ||||| | | Sbjct 222 CCACCTCTTAGTCTTAGGACCAAGTGCAGAGTGGACTCCTTTTGAATGTTATAGTCCGAC 163 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| || |||| |||| ||| || || ||| |||| | || |||||||||| ||| Sbjct 162 AAAGTTCTGCCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGGA 103 Query 16829 ACGCCCTCTTTGT-CGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGT 16887 | ||||||||| | | | | || || ||| || | | | | |||||| || ||| Sbjct 102 ATGCCCTCTTTATCCTGTATCTTACT-CTTTACATTGTCGATCGTGTCGGAGGACTCGAC 44 Query 16888 TTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATC 16930 |||| || ||||| || ||||| | || ||||| |||||| Sbjct 43 CTCCAAAGTAATGGTCTTACCGGTTAAAGTCTTGACGAAAATC 1 >seq165 Length=43850 Score = 86.0 bits (94), Expect = 5e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 16721 CTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCCATGGTTTTGGCG 16780 |||| |||| || || || || |||||||| ||||||||||| | || |||| | || Sbjct 16276 CTCAACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCG 16335 Query 16781 TCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGCACGCCCTCTTTG 16840 || || || || || || ||| | || | | ||||| || ||| | || || ||| Sbjct 16336 TCTTCTAACTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTG 16395 Query 16841 TCGGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCGTTTCCACGGTGATG 16900 || ||||| | ||| || | | | | || ||| | || ||||| || ||| Sbjct 16396 TCTTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATG 16455 Query 16901 GTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||||| ||||||| || ||||| ||||||||||| Sbjct 16456 GTTTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 16490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405083665305220