Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F000805465.1_202014- 12-19] 878 sequences; 21,919,346 total letters Query= NC_020842.1 Length=79114 Score E Sequences producing significant alignments: (Bits) Value seq248 163 1e-35 seq407 123 1e-23 seq125 120 2e-22 seq83 91.5 7e-14 >seq248 Length=29684 Score = 163 bits (180), Expect = 1e-35 Identities = 321/473 (68%), Gaps = 4/473 (1%) Strand=Plus/Plus Query 25892 GGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAATC 25951 ||| |||||||| |||| | |||| || || || ||| || | |||||||| | Sbjct 7088 GGAGAGAATAAAGTCCAAGTGCCGTTTTCTTCGACACGCTTCATGAAAAGATCTGGAACC 7147 Query 25952 CACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTAGA 26011 || | ||| |||||||||||||| | |||||||| || |||||||||||| | | Sbjct 7148 CATAGAGCAGGGAATAAATCTCTCGCACGGATTTCTTCCTTACCGTGATTCTTTCTAATG 7207 Query 26012 TCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTTTT 26071 || | ||| || || ||||| | ||||||||| || ||||| | |||||| ||| | Sbjct 7208 TCGATGAAGTCGAAGATATCAGCGTGCCATGGCTCCAAATATAGAGCAAAGGCACCAGGT 7267 Query 26072 CTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTGGA 26131 || || |||||||| || || || | ||||| | ||||| || | ||| ||| Sbjct 7268 CTCTTGTTACCACCTTGGTCAACATAACGGGCAGTATTGTTGAAGACACGGATCATAGGA 7327 Query 26132 ACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATATCG 26191 | ||| || | ||| |||||||| | | ||| | || || || | | ||| | | Sbjct 7328 ATTAACCCGTTAGAAGTCCCGTTTGTACCAGCAATGTAAGAGCCGGTTGCACGAATGTTG 7387 Query 26192 TGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATC--TGAAACTG 26249 || ||| | ||| || || ||||| ||| ||||| ||||| || | ||| | Sbjct 7388 TGGATATGTAGACCAATACCTCCAGCAGTTTTAGAAATCAAAGCACATTCCTTCAAA--G 7445 Query 26250 TATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATT 26309 ||||| |||| |||| ||| |||| | |||||| | | ||| ||||| || || | || Sbjct 7446 TATCGTAAATACCTTCAATGGAATCATCCTTCATTGCAACTAAGAAACAGGAGGACATTT 7505 Query 26310 GCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | | | || || | || ||||| || || | ||||||||| | ||| Sbjct 7506 GAGGCTTTGGAGTACCAGCGTTGAATAAAGTTGGAGAGGCATGAGTAAAGTAT 7558 >seq407 Length=15551 Score = 123 bits (136), Expect = 1e-23 Identities = 311/473 (66%), Gaps = 0/473 (0%) Strand=Plus/Plus Query 25890 TTGGACAGAATAAATGCCAATCAGCATTTTGCTCAACTTTCTCCATAAATAAATCTGGAA 25949 ||||| ||||||| ||| |||||| || || || ||| || | ||| |||| Sbjct 5695 TTGGAGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAGATCAGGAA 5754 Query 25950 TCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTCTTTTCCGTGATTCTTTTTTA 26009 |||| | ||| || |||||||| || | ||||| ||||| ||||| ||||| | | Sbjct 5755 TCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTTCTTCCTAA 5814 Query 26010 GATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAAATAGATAGCAAAACTACCTT 26069 ||| | |||||||| ||||| | ||||||||||| | || | ||||| ||| Sbjct 5815 TATCAATAAAATCAAATATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAACGCACCAG 5874 Query 26070 TTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTCATTGAAAACTTTCAACATTG 26129 |||||| ||||| || || || || | ||||| | ||||||||| | ||| | Sbjct 5875 GTCTTTTATTACCACCCTGGTCAACATAACGGGCAGTGTTATTGAAAACACGAATCATAG 5934 Query 26130 GAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTTGGATCCTGTCGATCTAATAT 26189 ||| ||| || | ||| |||||||| | | ||| | || || || || | ||| | Sbjct 5935 GAATTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGT 5994 Query 26190 CGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAATAGCTGCACAATCTGAAACTG 26249 || ||| | ||| || |||||||| ||| ||||| ||||| || | | Sbjct 5995 TATGGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAGG 6054 Query 26250 TATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAATAAAAAACAAGAAGATAATT 26309 | ||| |||| || | || || | ||||| | | || |||||||| || | || Sbjct 6055 TGTCGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGACATTT 6114 Query 26310 GCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGCATGAGTATAATAT 26362 | | | | || || | ||| || || || || | || |||||| ||||| Sbjct 6115 GAGGTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTGAGTAAAATAT 6167 Score = 89.7 bits (98), Expect = 3e-13 Identities = 317/492 (64%), Gaps = 14/492 (3%) Strand=Plus/Plus Query 24695 GTTCTAAGATAATACATTCCAGTTTTCAATTTCTTCTTCCAACCGTAAAAATGCATTGAT 24754 ||||| | ||| ||||| || || |||||| ||||||||| |||||||||||||| | Sbjct 4521 GTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAAAAATGCATACTT 4580 Query 24755 GTTAGTTTTGCAATGTTTGCTGATTCTAAAAACAAGTTCATCGATTGAGCTTGG-CAA-- 24811 |||||||| | || ||| | ||| ||||| |||| || |||| ||| ||| Sbjct 4581 GTTAGTTTACCCATAGTTGGGGCACGTAAGAACAAATTCAAAGAATGAGATTGATCAATA 4640 Query 24812 ---ACAAAACGTTGTCTATCTGCAGCTAAGTCAATGATCGTTTTCATCGATATATCGTAA 24868 ||| |||| ||| || || | || |||||| || || || || || || Sbjct 4641 TAGACAGAACG------ATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATTTCCCAA 4694 Query 24869 GCTGTTTTGTATCTCTCTTTTATCTCAGTTGGAATACTTGCAATATTTTGAACTGATCCA 24928 | || |||||| || || | || ||||| | ||| | ||||| || ||| Sbjct 4695 ACAGTCTTGTATAAGTCCTTCAATTCTTGTGGAACATTTGGTAAGCCTTGAATGGAGCCA 4754 Query 24929 TTTTCTCTCAATAGATTCAATCTCATATTCGGTGTCCAAAGAT-TAATTTTTTCAAGATC 24987 |||| | | | |||| | | ||||| | ||||| | ||| | |||| || Sbjct 4755 TTTTGTGTAATCAGATACTGTTTCATACCCTCATCCCAAATACCTAAATCAACCAAG-TC 4813 Query 24988 TCTAATCAAGTGTTTATTTATGATAATAAATTCTCCAGACAAAACTCTTCTTATTGATAA 25047 | | |||| || | | ||||| || || || || | | | | Sbjct 4814 ACGCAGTAAGTAAGGGTTCACAACCTGGAATTCACCGGATAAGACACGACGGGAGTACAT 4873 Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 || ||||||| |||||| ||||||||||||| || || ||||| || || ||||| || Sbjct 4874 ATTGGAAGTGACTGGTTCGAAACATTCATTATAACCCAATATTTGGGATGTGGATGCAGT 4933 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 |||||| ||| || | |||||||| | ||||| || | || |||| | |||| Sbjct 4934 AGGCATTGGTGCCATGGTCAAGGAATTTCTAATACCATGCTTCATGATATCTTTTCTTAA 4993 Query 25168 TTTATCCCAATC 25179 | |||||||| Sbjct 4994 GGTGTCCCAATC 5005 >seq125 Length=52383 Score = 120 bits (132), Expect = 2e-22 Identities = 287/434 (66%), Gaps = 0/434 (0%) Strand=Plus/Plus Query 25930 CTCCATAAATAAATCTGGAATCCACATTGCATAAAATAAATCTCTCGCTCTCATTTCTTC 25989 || ||| || | ||| |||||||| | ||| || |||||||| || | |||||||| Sbjct 7930 CTTCATGAAAAGATCGGGAATCCATAGAGCAGGGAACAAATCTCTTGCACGAATTTCTTC 7989 Query 25990 TTTTCCGTGATTCTTTTTTAGATCTAAGAAATCAAAAATATCTGAGTGCCATGGTTCTAA 26049 || || ||| ||||| | | ||| | || || || || |||| |||||||| || || Sbjct 7990 CTTACCATGAGTCTTTCTGATATCGACAAAGTCGAAGATGTCTGCATGCCATGGCTCCAA 8049 Query 26050 ATAGATAGCAAAACTACCTTTTCTTTTTCCTCCACCTTGATCTACGTATCTTGCAGTTTC 26109 | | ||||| ||| ||| || |||||||| || ||||| | |||||| | Sbjct 8050 GAAAAGGGCAAAGGCACCGGGTCTCTTGTTACCACCTTGGTCCACGTAACGTGCAGTGTT 8109 Query 26110 ATTGAAAACTTTCAACATTGGAACTAATCCAGTTGAAAATCCGTTTGTGCTATGAATCTT 26169 ||||| || | ||| |||| || || ||||| ||||| || | ||| | Sbjct 8110 GTTGAAGACACGGATCATGGGAATCAACCCGTTTGAAGTACCGTTGGTACCTGCAATATA 8169 Query 26170 GGATCCTGTCGATCTAATATCGTGAGCATGAATACCGATTCCACCAGCCCATTTTGAAAT 26229 || ||||| || | ||||| || ||||| ||| | ||||| || || ||||| Sbjct 8170 AGAGCCTGTGGAACGAATATTGTTGATATGAAGACCAACACCACCTGCAGTCTTGGAAAT 8229 Query 26230 AGCTGCACAATCTGAAACTGTATCGAAAATTCCTTTTATGCTATCACCTTTCATTCCTAA 26289 ||||| ||| | || ||| |||| |||| ||| || | ||||| | | Sbjct 8230 CATGGCACACTCTTTCAAAGTGTCGTAAATACCTTCAATGGAGTCGTCCTTCATGGCAAT 8289 Query 26290 TAAAAAACAAGAAGATAATTGCGAATGAGTTGTTCCTGAATTAAATAATGTCGGTGTAGC 26349 | ||||||||||| | ||| | ||| | || || | |||||||| ||| || | ||| Sbjct 8290 CAGGAAACAAGAAGACATTTGAGGATGTGGCGTACCGGCATTAAATAGTGTGGGGGAAGC 8349 Query 26350 ATGAGTATAATATC 26363 || || | |||| Sbjct 8350 GTGGGTGAAGTATC 8363 >seq83 Length=68286 Score = 91.5 bits (100), Expect = 7e-14 Identities = 213/315 (68%), Gaps = 10/315 (3%) Strand=Plus/Minus Query 25048 GTTTGAAGTGAATGGTTCAAAACATTCATTATTTCCTAAGATTTGAGAAGTAGATGCTGT 25107 |||||| || | |||||| ||||||||||||| || | ||||| ||||| || || || Sbjct 61298 GTTTGAGGTCACTGGTTCGAAACATTCATTATAACCAAGAATTTGGGAAGTTGAGGCGGT 61239 Query 25108 TGGCATTAATGCTATTAATAGCGAATTTCTCAAACCATATTTAACAATCTCTTGTTTTAA 25167 ||||||| ||| || | || ||||| || |||| ||||||||| || | | |||| Sbjct 61238 TGGCATTGGTGCCATAGTCAAAGAGTTTCTTAACCCATGTTTAACAATGTCCTTTCTTAA 61179 Query 25168 TTTATCCCAATCTAAATTATTATCTAACTCG-ATATCGTTATCATATAAATCAAATTGTA 25226 | ||||| || | | | || | | || |||| || || ||| ||||||| Sbjct 61178 GGTTTCCCAGTCCCACAT----GCCAAATGGTTTAGCGTT-CCACAT--ATCGAATTGTA 61126 Query 25227 ACAATCCACTT-GCTGCAGGCGATTGATCAAAAGTTGAATATTTACCTTTTGTTATTGCC 25285 | ||| | ||| | || || || |||||||| ||||||||||||| | || ||| Sbjct 61125 A-AATACCCTTGGAAGCTGGAGAACCTTCAAAAGTAGAATATTTACCTTCTTTTTGGGCC 61067 Query 25286 ATATCTTTTGATTGCTCTAACGCAGCATAATACATATTTTCAAAAATCGCTTTGTTTAAA 25345 | || || || | | ||||| || ||| |||| || || |||||||| | Sbjct 61066 AATTCACAGGAGGCTTCAAGAGTAGCATGGTAAATAGTTTCGAAGATTTGTTTGTTTAGA 61007 Query 25346 AACTTAGCTTTTTCT 25360 | ||||| |||| Sbjct 61006 GTTTGAGCTTCTTCT 60992 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 253037292313850