Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F000805465.1_202014- 12-19] 878 sequences; 21,919,346 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq177 145 6e-30 seq141 134 1e-26 seq326 96.9 3e-15 >seq177 Length=41604 Score = 145 bits (160), Expect = 6e-30 Identities = 376/567 (66%), Gaps = 16/567 (3%) Strand=Plus/Plus Query 19360 TATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTACA 19419 || || || || ||| ||| |||||||||||||| ||| || | ||| | | || | | Sbjct 5918 TACGGTCCTCCAGGTACTGGTAAAACATTAATTGCAAGAAAAATCGGTACAATGCTGA-A 5976 Query 19420 AAACAACCTCCCAAA-ATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAATC 19478 ||| ||||| ||||| || ||||||||| | |||| ||| ||||| ||| || Sbjct 5977 CGCCAAAGAGCCAAAGATTGTTAACGGTCCTGAAGTTTTAAGTAAGTATGTTGGTTCCTC 6036 Query 19479 GGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAAAACGTTTAGGGCG 19538 |||||||| | || ||| || ||||| |||| |||| | || | |||| | Sbjct 6037 AGAAGAAAACATCCGTAATTTATTCAAAGACGCAGAAGCAGAATACAAG-GCCAAGGGGG 6095 Query 19539 CAAAAG-TTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGCAAAGAG 19597 || ||| || || || || || | |||||| |||| | | | ||||| |||| Sbjct 6096 ATGAATCTTCCTTACATATCATCATTTTTGATGAACTGGATTCTGTTTTCAAGCAGAGAG 6155 Query 19598 GTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGTCAAAAT 19651 |||| || || | ||| ||| ||||| ||| || |||||| | ||| | ||| Sbjct 6156 GTTCAAGAGGTGATGGTACTGGTGTAGGTGACAATGTAGTTAATCAATTGCTGGCTAAAA 6215 Query 19652 TAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGACTGGAAT 19711 | ||||||||| | |||||||||||||| || || ||||| ||||| || | || | Sbjct 6216 TGGACGGTGTTGATCAACTGAATAATATATTGGTCATTGGTATGACCAACCGTAAAGATT 6275 Query 19712 TAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTAACTTAC 19771 | || || | || | ||||| || ||| | || ||| | || | |||||| | |||| Sbjct 6276 TGATCGATATTGCTCTTTTACGTCCAGGTAGATTCGAAGTTCAGGTTGAAATTCATTTAC 6335 Query 19772 CCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGACAAAATA 19831 | || ||| || | || | ||||| | || || ||| || ||| || |||| | Sbjct 6336 CGGACGAAAAAGGTAGACTGCAGATTTTTGAAATTCAGACAAAAAAAATGAGAGAAAACA 6395 Query 19832 ACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCT---ACCAAAAACTATA 19888 | | | | |||||||| | | | || | ||||||| || || || | | Sbjct 6396 ATATGATGAGCGACGATGTTAACTTGGCTGAGTT---AGCGGCTTTAACTAACAATTTTT 6452 Query 19889 GCGGCGCAGAACTTGAGGGATTAGTGA 19915 ||| || ||| |||| || ||||||| Sbjct 6453 CCGGTGCTGAAATTGAAGGTTTAGTGA 6479 >seq141 Length=49634 Score = 134 bits (148), Expect = 1e-26 Identities = 447/690 (65%), Gaps = 34/690 (5%) Strand=Plus/Minus Query 19246 GGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGT--GTCGCGTGTTT 19303 || || ||| |||||||||| || |||| || | ||||| |||| |||| | ||| Sbjct 43928 GGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGAGCGTTTGCAAGTCGAATCTTT 43869 Query 19304 TTTC-TGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTT-- 19360 || | ||| | || || || |||| | |||||| || |||||| | Sbjct 43868 CCTCCTTCAGTT---ATAGAAAAACTGGGTATTTCTCATGTTAAAGG---TTTGCTATTG 43815 Query 19361 -ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 | || || || ||| ||| || || |||||||| ||| | || ||| | | || | Sbjct 43814 TACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATTGGTACAATGCTGAAT 43755 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | ||| | || |||||| || |||||||| ||||| || | || || || ||| Sbjct 43754 GCTAAAGAGCC---CAAAATCGTCAATGGTCCAGAAATTTTGAGCAAGTACGTTGGTTCT 43698 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAA-----AACGTT 19531 || |||||||| | || ||| ||| || || |||| |||| | | || | | Sbjct 43697 TCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAGAATATAGGGCCAAGGGT 43638 Query 19532 TAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591 ||| || ||| || || ||||| || | ||||| |||| | | | |||| Sbjct 43637 GAGG-----AATCTTCCTTACATATTATTATTTTCGATGAGCTGGATTCTGTTTTCAAGC 43583 Query 19592 AAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645 | |||||||| || || | ||| ||| |||| ||| || |||||| | | Sbjct 43582 AGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAGTTAATCAATTGTTAG 43523 Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705 | ||| | || |||||| | || ||||||||||||| |||||||| ||||| ||| | Sbjct 43522 CTAAAATGGATGGTGTTGATCAGTTGAATAATATTTTGGTTATTGGTATGACCAATCGTA 43463 Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765 || ||||||||||| || | || || || ||| | || ||| | | | |||||| Sbjct 43462 AAGATTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTC 43403 Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGAC 19825 | |||||||||||| ||| | | ||||||| |||| || || | ||| | Sbjct 43402 ATTTACCCGATGAAAAAGGAAGACTCCAAATTTTCGACATTCAGACGAAGAAAATGAGGG 43343 Query 19826 AAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 ||||||| | | | |||||||| | ||| || | || || || ||||||| Sbjct 43342 AAAATAATATGATGAGCGACGATGTTAACTTAGCTGAGTTAGCTGCATTAACAAAAAACT 43283 Query 19886 ATAGCGGCGCAGAACTTGAGGGATTAGTGA 19915 || || || ||||||| ||||||| Sbjct 43282 TCTCTGGTGCTGAGATTGAGGGTTTAGTGA 43253 >seq326 Length=22931 Score = 96.9 bits (106), Expect = 3e-15 Identities = 172/251 (69%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 41103 CTGTCATGTCAATTGTATCAAAGATCAGGTGACATGGGACTAGGGGTCCCGTTTAACATA 41162 || ||||| |||||| ||| | || |||| ||||| | || || || |||||||| Sbjct 2448 CTTTCATGCTTATTGTACCAACGTTCTTGTGATATGGGGTTGGGAGTACCATTTAACATT 2389 Query 41163 GCGAGTTATGCTCTGCTCACGTATATGATTGCACACGTTACCAATTTAAAACCTGGTGAA 41222 || |||||| || | || |||||||| | ||| | | | | || ||||| Sbjct 2388 GCATCATATGCTTTGTTGACTAGAATGATTGCTAAAGTTGTCGACATGGAGCCAGGTGAG 2329 Query 41223 TTTGTTCACACGTTAGGAGATGGACATATTTACATTAATCACATAGAGCCGTTAACAGAA 41282 || |||| || || || |||| |||| |||| | | ||||| || | || | |||| Sbjct 2328 TTCATTCATACTTTGGGGGATGCACATGTTTATAAAGACCACATTGATGCCTTGAAAGAA 2269 Query 41283 CAACTGACACGAAAACCTAGACCATTTCCAACGCTACTTATTAAACGCGCTGTTGAAAAC 41342 ||| | || |||| || |||||||| || | ||| |||||| | | ||| || || Sbjct 2268 CAAATCACCAGAAATCCAAGACCATTCCCGAAACTAAAGATTAAAAGGGACGTTAAAGAC 2209 Query 41343 ATTGATGATTT 41353 ||||||||||| Sbjct 2208 ATTGATGATTT 2198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397451746972390