Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F000805465.1_202014- 12-19] 878 sequences; 21,919,346 total letters Query= NC_028108.1 Length=171454 Score E Sequences producing significant alignments: (Bits) Value seq248 104 3e-17 seq407 86.0 7e-12 >seq248 Length=29684 Score = 104 bits (114), Expect = 3e-17 Identities = 128/175 (73%), Gaps = 0/175 (0%) Strand=Plus/Plus Query 78188 GTGTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATAC 78247 |||||| |||||| ||||| || ||||| |||||||||||||| ||||| | ||||||| Sbjct 5910 GTGTTCTCAAATAATACATACCGGTCTTTAGACCCTTCTTCCAGCCGTAGAAATGCATAC 5969 Query 78248 TCGACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGA 78307 | | ||||| ||| | | ||| || ||| | || | || || || ||||||| Sbjct 5970 TTGTTAGCTTACCCATAGTTGGGGCACGCAAGAATAAATTCAAAGAGTGAGATTGGTCGA 6029 Query 78308 TGTACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCA 78362 |||| | |||||||| ||||||| |||| | |||||| | ||| ||||| Sbjct 6030 TGTAAATGGCACGGTCGGCTGCCATGTTAATGATTGTCTTTTGTGAAATTTCCCA 6084 >seq407 Length=15551 Score = 86.0 bits (94), Expect = 7e-12 Identities = 140/202 (69%), Gaps = 0/202 (0%) Strand=Plus/Plus Query 78190 GTTCGCAAATAGTACATGCCCGTCTTGAGACCCTTCTTCCATCCGTACAGGTGCATACTC 78249 |||| |||||||||||| || ||||| | ||||||||||||||||| | |||||||| Sbjct 4521 GTTCTCAAATAGTACATACCGGTCTTCAATCCCTTCTTCCATCCGTAAAAATGCATACTT 4580 Query 78250 GACAGCTTGGCCAGACTCGGGTTCTCCATGAAGATGTTGAGCGACTGGGACTGGTCGATG 78309 | || || ||| | | ||| | ||| | || | || || || || || || Sbjct 4581 GTTAGTTTACCCATAGTTGGGGCACGTAAGAACAAATTCAAAGAATGAGATTGATCAATA 4640 Query 78310 TACGCACCGCGGTCGGCCGCCATGTCGATGACCGACTTTTGCGGAATCTCCCAGATGGTC 78369 || || || ||||| ||||||| |||| | |||||| | ||| ||||| | ||| Sbjct 4641 TAGACAGAACGATCGGCTGCCATGTTAATGATAGTCTTTTGTGAAATTTCCCAAACAGTC 4700 Query 78370 CGGTAAATGGCCTTCAGCTCTT 78391 ||| | | |||||| |||| Sbjct 4701 TTGTATAAGTCCTTCAATTCTT 4722 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 548518779940320