Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F000805465.1_202014- 12-19] 878 sequences; 21,919,346 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq405 104 2e-17 seq165 98.7 9e-16 >seq405 Length=15789 Score = 104 bits (114), Expect = 2e-17 Identities = 159/225 (71%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 41635 GCCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGA 41694 ||| || | ||| | || |||| ||||| ||| |||||| |||||||||||||| || Sbjct 223 GCCACCTCTTAGTCTTAGGACCAAGTGCAGAGTGGACTCCTTTTGAATGTTATAGTCCGA 164 Query 41695 GAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGG 41754 | || | |||| || || ||||| ||||| || |||| | ||||||||||| || Sbjct 163 CAAAGTTCTGCCGTCTTCCAGTTGCTTACCGGCAAAAATCAACCTCTGTTGGTCCGGAGG 104 Query 41755 AACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGACGACACAGTGTCGCTCGACTCC 41812 || || ||| || ||| || || ||| || | || | |||||| ||||| Sbjct 103 AATGCCCTCTTTATCCTGTATCTTACTCTTTACATTGTCG--ATCGTGTCGGAGGACTCG 46 Query 41813 ACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTACGAAAATC 41857 ||||||| || || || ||||| || | ||||| ||||||||| Sbjct 45 ACCTCCAAAGTAATGGTCTTACCGGTTAAAGTCTTGACGAAAATC 1 >seq165 Length=43850 Score = 98.7 bits (108), Expect = 9e-16 Identities = 151/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||||| ||| ||| |||||||||||||| || || || || | |||| Sbjct 15823 AACACCAAATGCAACGTAGACTCTTTCTGAATGTTATAATCAGACAGCGTTCTACCGTCT 15882 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || || ||||| ||||| || |||| | ||||| || | |||| | ||||||| | Sbjct 15883 TCCAGTTGCTTACCGGCAAAAATCAATCTTTGTTGATCTGGAGGAATACCTTCCTTGT-C 15941 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| || ||| | | | ||||||| || || ||||| | ||||| || Sbjct 15942 TTGAATTTTACTTTTGACGTTGTCAATAGTGTCGGAAGATTCAACCTCTAGGGTTATAGT 16001 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || || || || || || |||||||| ||||| Sbjct 16002 CTTCCCTGTTAGAGTTTTGACGAAAATTTGCAT 16034 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| || || || |||||||||||||| || || || || || | |||| Sbjct 16051 AACACCAAGTGAAGAGTAGATTCCTTCTGAATGTTGTAATCAGACAGCGTTCTACCGTCT 16110 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || |||||||| ||||| || |||| | ||||| || | || | | ||||||| | Sbjct 16111 TCTAGCTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGT-C 16169 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| | | |||| | | | || ||| || || || |||| ||||| || Sbjct 16170 TTGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGT 16229 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| |||| ||||| || || |||||||| Sbjct 16230 TTTACCGGTCAAAGTCTTAACAAAGATCTGCAT 16262 Score = 89.7 bits (98), Expect = 5e-13 Identities = 149/213 (70%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| || || || ||||| || ||||| ||||| || | ||| | |||| Sbjct 16279 AACACCAAGTGAAGAGTAGATTCCTTTTGGATGTTGTAGTCAGACAAGGTTCTACCGTCT 16338 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCC 41770 || | |||||| ||||| || |||| | ||||| || | || | | |||||||| Sbjct 16339 TCTAACTGCTTACCGGCAAAGATCAATCTTTGTTGATCTGGAGGGATACCTTCCTTGTCT 16398 Query 41771 ATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCACCTCCACCGTTATCGT 41829 ||| |||| | | |||| | | | || ||| || || || |||| ||||| || Sbjct 16399 -TGAATTTTCGACTTAACGTTGTCGATGGTATCGGAAGATTCAACTTCCAATGTTATGGT 16457 Query 41830 TTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 |||||| |||| ||||| |||||||||||||| Sbjct 16458 TTTACCGGTCAAAGTCTTGACGAAAATCTGCAT 16490 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462298926213600