Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Saccharomyces_20pastorianus_20[genbank_20GCA_5F001483335.1_202015- 12-30] 8,919 sequences; 28,078,724 total letters Query= NC_001895.1 Length=33593 Score E Sequences producing significant alignments: (Bits) Value seq1378 172 1e-38 seq4801 156 9e-34 >seq1378 Length=479 Score = 172 bits (190), Expect = 1e-38 Identities = 290/415 (70%), Gaps = 16/415 (4%) Strand=Plus/Plus Query 23343 CTGTTGTTTCTCAAAGCGGGGCAGGGAGTGACGGCCAGCGGTaaaaaaaTCCCGCAGGTC 23402 ||| ||||||| ||||| || || ||||||||||||||| || || ||| | Sbjct 69 CTGCTGTTTCTGCGTCCGGGGAGCGGCGTCACGGCCAGCGGTAAACCCATTCCACAGCTG 128 Query 23403 ACCATAACCCG-CAGCGACGGCGACCGCCA-TCATTTTGCGATTGCTGACCGTGGAGCCT 23460 || || || || ||| ||||| |||||||| | || || || |||||||| || || | Sbjct 129 ACGATTACACGACAG-GACGGTGACCGCCACACCTTCAGC-ATCGCTGACCGGGGCGCAT 186 Query 23461 ACACCGGTGTAACGGCAAAATGGCTACACACTAAAGACCCGAAGCCGCAAAAGCAGAAGG 23520 | ||||| || ||||| | ||||| || || | ||| ||||||||| || |||| Sbjct 187 ATACCGGCGTGACGGCCAGCTGGCTGCATACCAGAGATCCGAAGCCGAAA------AAGG 240 Query 23521 TAAAACTGAAACGCAAAAAGAAAGAGAAACACCTGCGCGCACTGGAGCACCCGAAAGCGA 23580 |||| | |||||||| | ||| |||||||||||||| |||||||| || |||| Sbjct 241 TAAAGGTCAAACGCAAGCCGCGAGAAAAACACCTGCGCGCCTTGGAGCACACGGCGGCGA 300 Query 23581 AACCGGTCAGGCAGAAGAAAGCGCCTAAAGTACCGGAAGCGCGTGAAGGTGAATACATGG 23640 || | | | ||| | | ||| |||||||| || || || || || ||| Sbjct 301 AA------AAGAAAAAGGTGGTTACAAAAACGCCGGAAGCACGCGAGGGGGATTATCTGG 354 Query 23641 CCGGTGAGGCTGACAACGTTTTTGCCCTGACCACGGTATATGCCACGAAAGCGCAGGCCA 23700 ||| | || ||||| ||| ||| ||||||| || |||| ||||| || | Sbjct 355 CCGCCACCGAAGATAACGTGTTTATGCTGCCCACGGTTTACGCCATCAAAGCCGCCGCGA 414 Query 23701 TGCGCGCCGCTCAGGCGAAGTGGGATAAACTGCAACGGGGCGTTGCGGAGTTCTC 23755 |||||||||| |||| || ||||| || ||||| ||||| ||||| ||||| || Sbjct 415 TGCGCGCCGCAAAGGCCAAATGGGACAAGCTGCAGCGGGGTGTTGCTGAGTTTTC 469 >seq4801 Length=500 Score = 156 bits (172), Expect = 9e-34 Identities = 127/154 (82%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 25560 CACTTGTGATGAATATATTCACGATGAATTGTTAACCAGTCTTTTGACCGGAGTGGGGCG 25619 || |||| || |||| | ||||| |||||||||||||||||||||| ||||||| ||| Sbjct 18 CATTTGTAATAAATAAACTCACGGTGAATTGTTAACCAGTCTTTTGGTCGGAGTGCTGCG 77 Query 25620 ACGTTGTTTCGTTTTGCCCAAAGTGTGCGAGAGCGGGCGCAATTTGCCCGGACTCAGGAG 25679 | |||||| | | ||||||||||||||||||||| || |||| |||||||||||||| | Sbjct 78 AGGTTGTTGCATCTTGCCCAAAGTGTGCGAGAGCCGGTTCAATCTGCCCGGACTCAGGTG 137 Query 25680 CGATCTGATTGGTCATGAACCATAAAGTGTATTT 25713 | ||||| | |||||| ||||| | ||||| || Sbjct 138 CTATCTGGTCGGTCATAAACCAAAGGGTGTACTT 171 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 107364627472290